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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:933.6 nTPM
HPA Brain:393.6 nTPM
GTEx:933.6 nTPM
FANTOM5:16.0 Scaled Tags Per Million
Pig:236.8 nTPM
Mouse:371.3 nTPM
Allen mouse:9.5 Expression energy

AMYGDALA - Annotated protein expression
Pending normal tissue analysis

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

393.6
Sample id Sample description nTPM
Amygdala
nTPM: 393.6
2695 Female, age 67, right hemisphere 481.8
2514 Male, age 75, right hemisphere 417.4
1987 Female, age 91, left hemisphere 378.4
2517 Female, age 94, left hemisphere 353.9
2814 Male, age 76, right hemisphere 336.4
Basal amygdala
nTPM: 330.7
2827 Female, age 67, right hemisphere 458.4
2609 Male, age 75, right hemisphere 369.0
2110 Male, age 80, left hemisphere 335.1
2685 Female, age 94, left hemisphere 304.8
1955 Male, age 76, both hemispheres 278.9
2243 Female, age 91, right hemisphere 237.7
Central amygdala
nTPM: 373.5
2826 Female, age 94, left hemisphere 623.9
2515 Male, age 75, right hemisphere 399.6
1905 Male, age 76, both hemispheres 314.2
2239 Male, age 80, left hemisphere 271.2
2701 Female, age 91, right hemisphere 258.6
Corticomedial amygdala
nTPM: 291.1
2428 Male, age 75, right hemisphere 372.1
2829 Male, age 80, left hemisphere 319.3
2535 Female, age 67, right hemisphere 295.7
2429 Female, age 94, left hemisphere 267.3
2242 Female, age 91, right hemisphere 255.1
2240 Male, age 76, both hemispheres 237.1
Lateral amygdala
nTPM: 392.4
2830 Female, age 67, right hemisphere 632.9
2516 Male, age 75, right hemisphere 458.9
2534 Female, age 94, left hemisphere 406.5
2256 Male, age 80, left hemisphere 332.2
1883 Male, age 76, both hemispheres 274.6
2255 Female, age 91, right hemisphere 249.5

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

933.6
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 933.6
Samples: 152

Max nTPM: 2798.9
Min nTPM: 469.6
Std nTPM: 381.9
Median nTPM: 842.8
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 2798.9
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 2542.2
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 2538.8
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 2126.7
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 1867.9
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 1839.9
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 1796.3
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 1722.5
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 1670.4
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 1608.2
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 1532.8
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 1526.8
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 1523.4
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 1391.0
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 1347.1
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 1335.1
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 1317.8
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 1277.0
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 1243.9
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 1225.3
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 1196.3
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 1191.8
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 1189.7
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 1187.1
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 1152.1
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 1149.7
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 1140.6
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 1131.6
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 1101.3
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 1099.9
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 1098.4
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 1086.2
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 1082.9
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 1070.1
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 1067.3
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 1047.2
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 1046.8
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 1040.1
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 1016.2
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 1014.4
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 1013.0
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 1011.9
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 1005.1
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 996.0
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 995.6
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 992.4
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 974.5
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 967.2
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 966.4
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 964.7
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 961.1
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 954.6
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 953.9
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 953.2
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 948.7
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 940.7
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 932.0
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 928.1
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 922.5
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 921.4
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 909.9
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 890.1
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 888.2
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 887.5
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 884.9
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 882.2
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 873.9
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 873.3
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 866.5
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 859.2
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 858.5
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 853.8
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 846.7
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 846.5
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 845.0
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 844.9
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 840.7
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 831.2
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 830.5
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 821.7
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 820.4
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 814.3
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 812.9
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 811.4
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 809.4
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 806.3
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 797.1
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 789.8
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 783.8
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 782.6
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 779.3
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 775.1
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 769.7
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 768.1
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 765.8
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 760.7
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 758.3
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 758.3
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 758.0
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 752.7
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 751.5
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 750.8
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 747.8
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 747.8
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 743.2
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 741.4
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 722.3
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 721.2
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 719.0
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 718.8
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 715.7
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 714.4
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 707.9
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 699.9
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 688.5
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 686.4
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 683.4
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 683.1
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 681.8
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 677.3
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 674.5
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 670.5
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 669.1
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 665.6
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 662.9
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 651.7
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 647.1
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 646.2
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 641.7
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 638.7
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 635.3
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 624.4
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 615.9
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 604.7
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 599.9
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 597.5
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 596.6
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 594.0
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 585.4
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 585.4
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 584.1
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 583.2
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 573.4
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 564.9
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 560.5
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 557.3
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 540.5
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 523.7
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 520.8
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 484.1
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 477.0
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 469.6
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

16.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 16.0
FF:10151-102I7 76 years, female 16.0

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

236.8
Pig sample Sample description nTPM
Amygdala
nTPM: 236.9
Samples: 4

Max nTPM: 294.4
Min nTPM: 146.3
Sample A Female 262.8
Sample B Female 294.4
Sample C Male 243.9
Sample D Male 146.3

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

371.3
Mouse sample Sample description nTPM
Amygdala
nTPM: 371.3
Samples: 4

Max nTPM: 403.8
Min nTPM: 334.0
Sample A Male 334.0
Sample B Male 384.5
Sample C Female 403.8
Sample D Female 362.9

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

9.5
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 9.5
69549280 Antisense, RP_050126_02_C10, Mouse strain C57BL/6J (56 days, male) 9.5

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