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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
Brain proteome
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:1072.7 nTPM
HPA Brain:582.3 nTPM
GTEx:1072.7 nTPM
FANTOM5:11.9 Scaled Tags Per Million
Pig:445.5 nTPM

SPINAL CORD - Annotated protein expression
Pending normal tissue analysis

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

582.3
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 412.4
1981 Female, age 72, midline 551.5
2565 Male, age 75, midline 470.1
2048 Male, age 55, midline 382.8
2194 Female, age 79, both hemispheres 332.7
2816 Male, age 47, midline 325.1
Cervical spinal cord, dorsal horn
nTPM: 445.3
2173 Female, age 72, unknown 607.6
2069 Male, age 47, both hemispheres 559.4
2296 Male, age 66, both hemispheres 493.5
1877 Male, age 55, unknown 432.2
2297 Male, age 75, both hemispheres 298.1
2721 Male, age 90, both hemispheres 281.0
Cervical spinal cord, ventral horn
nTPM: 582.3
2809 Male, age 90, both hemispheres 773.7
2480 Male, age 75, both hemispheres 762.3
2098 Female, age 72, unknown 722.7
2295 Male, age 66, both hemispheres 539.1
2068 Male, age 55, unknown 426.1
2820 Female, age 79, both hemispheres 269.6

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1072.7
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 1072.7
Samples: 159

Max nTPM: 2250.1
Min nTPM: 426.8
Std nTPM: 341.0
Median nTPM: 1047.6
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 2250.1
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 1994.6
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 1926.5
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 1916.7
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 1829.7
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 1821.9
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 1806.0
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 1796.4
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 1763.1
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 1725.2
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 1710.8
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 1649.7
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 1619.2
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 1552.3
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 1500.0
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 1482.9
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 1470.7
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 1461.7
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 1457.2
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 1449.0
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 1440.7
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 1436.3
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 1436.0
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 1430.9
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 1407.8
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 1407.2
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 1394.3
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 1380.2
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 1366.1
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 1360.7
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 1358.2
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 1342.0
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 1330.2
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 1318.9
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 1302.2
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 1296.3
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 1290.9
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 1281.2
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 1266.6
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 1247.3
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 1245.6
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 1245.0
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 1232.2
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 1222.5
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 1219.8
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 1217.5
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 1212.6
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 1211.1
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 1203.7
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 1200.9
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 1198.4
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 1194.2
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 1185.9
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 1185.8
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 1178.4
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 1177.6
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 1165.0
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 1164.4
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 1157.7
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 1157.2
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 1155.6
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 1148.0
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 1146.5
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 1134.5
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 1130.1
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 1119.2
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 1103.8
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 1102.1
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 1097.9
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 1090.8
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 1086.3
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 1081.7
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 1073.8
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 1067.6
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 1065.7
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 1058.4
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 1055.8
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 1052.1
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 1048.4
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 1047.6
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 1039.6
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 1032.3
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 1019.8
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 1017.7
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 1008.1
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 1001.9
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 998.3
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 995.7
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 994.4
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 992.1
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 982.6
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 977.1
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 958.1
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 954.0
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 952.4
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 943.4
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 942.4
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 940.2
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 938.3
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 934.9
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 932.4
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 928.7
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 910.7
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 902.1
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 901.4
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 901.1
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 898.7
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 880.6
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 867.4
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 862.2
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 854.6
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 850.3
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 849.5
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 847.2
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 833.1
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 828.1
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 825.3
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 812.7
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 810.8
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 807.7
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 787.1
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 784.0
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 783.1
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 781.3
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 777.5
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 776.2
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 775.1
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 761.6
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 760.0
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 758.2
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 756.0
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 756.0
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 744.4
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 723.3
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 719.8
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 714.6
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 708.6
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 702.2
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 701.4
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 696.6
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 694.9
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 684.6
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 682.4
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 677.7
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 677.4
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 668.8
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 658.7
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 652.8
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 650.3
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 645.5
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 638.8
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 633.5
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 621.8
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 602.0
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 578.4
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 457.7
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 456.3
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 429.6
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 426.8
Show allShow less

SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

11.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 11.9
FF:10181-103D1 60 years, female 15.8
FF:10159-103A6 76 years, female 7.9

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

445.5
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 445.5
Samples: 4

Max nTPM: 709.0
Min nTPM: 299.5
Sample A Female 305.5
Sample B Female 467.9
Sample C Male 709.0
Sample D Male 299.5
Ventral spinal cord
nTPM: 390.1
Samples: 4

Max nTPM: 498.3
Min nTPM: 282.9
Sample A Female 282.9
Sample B Female 400.4
Sample C Male 498.3
Sample D Male 378.7

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