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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:161.4 nTPM
HPA Brain:55.7 nTPM
GTEx:161.4 nTPM
FANTOM5:82.4 Scaled Tags Per Million
Pig:18.2 nTPM
Mouse:80.6 nTPM
Allen mouse:5.9 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

55.7
Sample id Sample description nTPM
Amygdala
nTPM: 55.7
2814 Male, age 76, right hemisphere 67.6
2695 Female, age 67, right hemisphere 66.6
1987 Female, age 91, left hemisphere 53.1
2514 Male, age 75, right hemisphere 46.5
2517 Female, age 94, left hemisphere 44.5
Basal amygdala
nTPM: 53.8
1955 Male, age 76, both hemispheres 61.1
2827 Female, age 67, right hemisphere 60.4
2110 Male, age 80, left hemisphere 57.2
2685 Female, age 94, left hemisphere 50.4
2243 Female, age 91, right hemisphere 47.0
2609 Male, age 75, right hemisphere 46.4
Central amygdala
nTPM: 53.9
2826 Female, age 94, left hemisphere 67.7
1905 Male, age 76, both hemispheres 63.2
2239 Male, age 80, left hemisphere 53.7
2701 Female, age 91, right hemisphere 45.6
2515 Male, age 75, right hemisphere 39.5
Corticomedial amygdala
nTPM: 46.5
2429 Female, age 94, left hemisphere 51.0
2829 Male, age 80, left hemisphere 50.3
2240 Male, age 76, both hemispheres 48.7
2535 Female, age 67, right hemisphere 46.0
2242 Female, age 91, right hemisphere 43.4
2428 Male, age 75, right hemisphere 39.3
Lateral amygdala
nTPM: 53.3
2830 Female, age 67, right hemisphere 67.8
1883 Male, age 76, both hemispheres 65.9
2534 Female, age 94, left hemisphere 58.4
2516 Male, age 75, right hemisphere 48.3
2256 Male, age 80, left hemisphere 40.1
2255 Female, age 91, right hemisphere 39.4

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

161.4
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 161.4
Samples: 152

Max nTPM: 392.1
Min nTPM: 96.1
Std nTPM: 43.8
Median nTPM: 159.3
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 392.1
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 322.7
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 316.0
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 263.3
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 255.8
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 254.2
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 245.6
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 232.8
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 230.4
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 226.6
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 221.0
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 219.5
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 218.8
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 214.5
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 210.8
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 210.0
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 209.6
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 206.1
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 205.5
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 204.4
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 204.3
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 202.2
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 200.2
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 196.7
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 191.9
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 191.7
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 190.8
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 190.7
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 188.1
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 186.5
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 186.3
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 186.2
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 183.5
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 182.0
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 181.6
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 180.5
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 179.7
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 179.7
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 178.3
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 178.3
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 177.4
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 177.4
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 176.5
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 175.7
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 175.6
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 175.3
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 175.2
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 174.8
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 174.8
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 171.7
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 171.0
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 170.4
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 170.2
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 168.1
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 168.1
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 167.5
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 166.5
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 165.3
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 164.9
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 164.2
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 163.7
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 163.6
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 163.2
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 163.2
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 163.0
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 162.8
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 162.7
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 162.7
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 161.6
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 161.6
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 161.1
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 160.2
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 160.2
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 160.1
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 159.9
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 159.6
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 159.0
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 157.2
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 155.4
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 154.8
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 154.3
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 154.3
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 152.1
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 151.9
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 150.3
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 150.2
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 150.0
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 149.0
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 148.3
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 148.1
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 147.0
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 146.1
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 146.0
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 145.7
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 145.6
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 144.1
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 144.1
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 143.1
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 141.2
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 140.9
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 140.5
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 139.6
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 137.3
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 137.0
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 137.0
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 136.9
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 136.3
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 136.0
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 135.8
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 135.7
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 135.5
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 135.1
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 134.3
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 133.2
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 132.4
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 131.4
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 130.3
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 130.2
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 129.7
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 128.0
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 125.4
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 125.2
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 124.6
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 124.4
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 123.5
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 122.9
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 122.5
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 121.1
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 119.2
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 119.1
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 118.9
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 118.1
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 117.4
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 117.2
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 116.8
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 115.7
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 115.5
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 114.3
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 113.4
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 111.5
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 109.3
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 109.0
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 106.7
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 105.7
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 105.6
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 104.4
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 101.4
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 100.3
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 100.0
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 98.5
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 96.9
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 96.1
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

82.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 82.4
FF:10151-102I7 76 years, female 82.4

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

18.2
Pig sample Sample description nTPM
Amygdala
nTPM: 18.2
Samples: 4

Max nTPM: 22.1
Min nTPM: 14.2
Sample A Female 22.1
Sample B Female 19.3
Sample C Male 17.0
Sample D Male 14.2

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

80.6
Mouse sample Sample description nTPM
Amygdala
nTPM: 80.6
Samples: 4

Max nTPM: 88.5
Min nTPM: 74.4
Sample A Male 74.4
Sample B Male 80.9
Sample C Female 88.5
Sample D Female 78.6

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

5.9
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 5.9
68666601 Antisense, RP_050126_02_E12, Mouse strain C57BL/6J (56 days, male) 5.9

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