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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:188.9 nTPM
HPA Brain:73.6 nTPM
GTEx:188.9 nTPM
FANTOM5:74.3 Scaled Tags Per Million
Pig:26.5 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

73.6
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 65.5
1981 Female, age 72, midline 74.7
2194 Female, age 79, both hemispheres 72.8
2816 Male, age 47, midline 68.1
2565 Male, age 75, midline 62.0
2048 Male, age 55, midline 49.9
Cervical spinal cord, dorsal horn
nTPM: 62.5
2173 Female, age 72, unknown 84.2
2296 Male, age 66, both hemispheres 81.9
2069 Male, age 47, both hemispheres 58.8
1877 Male, age 55, unknown 56.4
2297 Male, age 75, both hemispheres 48.3
2721 Male, age 90, both hemispheres 45.4
Cervical spinal cord, ventral horn
nTPM: 73.6
2480 Male, age 75, both hemispheres 95.6
2809 Male, age 90, both hemispheres 79.2
2068 Male, age 55, unknown 77.7
2820 Female, age 79, both hemispheres 74.0
2295 Male, age 66, both hemispheres 62.8
2098 Female, age 72, unknown 52.3

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

188.9
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 188.9
Samples: 159

Max nTPM: 355.9
Min nTPM: 67.9
Std nTPM: 53.4
Median nTPM: 188.2
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 355.9
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 327.7
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 325.0
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 292.5
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 292.0
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 290.7
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 287.0
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 285.4
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 281.5
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 272.8
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 271.6
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 270.8
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 270.7
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 270.2
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 265.8
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 263.6
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 261.9
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 260.0
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 257.5
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 254.6
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 252.4
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 250.6
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 250.3
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 247.5
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 243.0
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 241.5
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 239.1
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 238.3
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 235.5
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 233.6
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 233.4
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 229.0
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 228.0
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 226.2
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 224.9
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 224.0
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 222.9
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 221.5
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 221.4
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 219.6
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 218.2
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 218.1
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 217.9
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 217.4
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 216.8
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 216.0
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 215.3
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 215.1
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 213.5
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 213.4
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 213.3
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 213.1
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 211.5
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 211.2
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 210.8
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 209.6
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 209.4
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 206.7
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 205.2
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 205.2
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 204.5
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 203.8
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 203.5
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 202.8
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 201.4
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 200.5
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 199.9
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 198.0
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 197.7
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 196.5
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 196.3
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 193.3
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 192.6
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 192.0
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 190.8
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 190.6
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 189.7
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 189.0
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 188.5
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 188.2
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 187.5
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 187.4
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 187.2
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 186.6
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 186.5
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 186.1
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 183.1
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 182.3
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 181.3
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 180.5
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 174.8
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 174.8
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 174.6
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 173.2
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 173.2
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 171.2
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 170.6
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 170.5
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 170.0
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 169.7
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 169.5
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 169.4
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 168.6
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 167.0
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 166.6
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 166.3
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 165.0
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 164.7
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 164.1
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 164.0
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 162.8
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 157.8
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 154.8
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 154.3
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 153.5
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 150.5
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 148.9
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 146.8
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 146.7
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 146.4
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 145.8
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 145.2
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 144.3
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 144.0
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 142.5
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 142.4
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 142.1
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 138.1
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 137.7
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 136.4
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 134.8
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 134.7
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 132.9
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 130.0
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 129.3
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 128.5
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 128.0
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 126.0
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 125.2
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 124.0
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 123.8
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 123.4
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 123.4
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 120.7
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 120.5
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 119.3
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 118.6
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 118.5
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 118.2
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 117.7
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 117.1
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 106.1
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 101.6
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 100.7
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 95.4
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 94.2
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 83.5
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 82.9
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 67.9
Show allShow less

SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

74.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 74.3
FF:10181-103D1 60 years, female 82.7
FF:10159-103A6 76 years, female 66.0

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

26.5
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 24.8
Samples: 4

Max nTPM: 26.3
Min nTPM: 23.1
Sample A Female 26.3
Sample B Female 23.1
Sample C Male 24.0
Sample D Male 25.8
Ventral spinal cord
nTPM: 26.5
Samples: 4

Max nTPM: 32.1
Min nTPM: 24.5
Sample A Female 24.9
Sample B Female 24.5
Sample C Male 32.1
Sample D Male 24.5

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