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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:237.2 nTPM
HPA Brain:263.2 nTPM
GTEx:237.2 nTPM
FANTOM5:240.7 Scaled Tags Per Million
Pig:214.6 nTPM
Mouse:443.4 nTPM
Allen mouse:24.9 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

263.2
Sample id Sample description nTPM
Amygdala
nTPM: 235.8
1987 Female, age 91, left hemisphere 257.2
2517 Female, age 94, left hemisphere 255.4
2814 Male, age 76, right hemisphere 238.3
2514 Male, age 75, right hemisphere 223.6
2695 Female, age 67, right hemisphere 204.7
Basal amygdala
nTPM: 263.2
2243 Female, age 91, right hemisphere 341.9
2110 Male, age 80, left hemisphere 295.8
2685 Female, age 94, left hemisphere 258.6
1955 Male, age 76, both hemispheres 243.7
2609 Male, age 75, right hemisphere 227.4
2827 Female, age 67, right hemisphere 212.0
Central amygdala
nTPM: 246.0
2239 Male, age 80, left hemisphere 279.9
2826 Female, age 94, left hemisphere 276.6
2515 Male, age 75, right hemisphere 236.5
1905 Male, age 76, both hemispheres 225.9
2701 Female, age 91, right hemisphere 211.1
Corticomedial amygdala
nTPM: 260.8
2829 Male, age 80, left hemisphere 309.2
2242 Female, age 91, right hemisphere 301.9
2429 Female, age 94, left hemisphere 255.2
2535 Female, age 67, right hemisphere 248.0
2428 Male, age 75, right hemisphere 226.0
2240 Male, age 76, both hemispheres 224.4
Lateral amygdala
nTPM: 237.4
2534 Female, age 94, left hemisphere 316.6
1883 Male, age 76, both hemispheres 243.1
2256 Male, age 80, left hemisphere 224.3
2516 Male, age 75, right hemisphere 218.3
2255 Female, age 91, right hemisphere 212.2
2830 Female, age 67, right hemisphere 209.8

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

237.2
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 237.2
Samples: 152

Max nTPM: 436.6
Min nTPM: 148.3
Std nTPM: 50.8
Median nTPM: 228.0
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 436.6
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 388.9
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 386.2
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 371.4
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 358.1
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 347.5
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 332.6
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 320.1
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 311.9
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 311.2
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 310.6
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 309.8
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 303.8
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 303.4
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 301.6
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 300.9
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 298.7
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 295.1
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 293.1
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 292.6
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 291.8
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 291.1
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 290.7
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 289.9
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 289.2
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 289.0
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 285.6
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 284.0
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 281.0
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 280.1
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 279.3
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 277.3
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 276.6
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 272.3
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 271.9
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 270.3
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 270.1
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 267.1
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 267.0
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 266.4
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 264.6
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 263.6
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 262.6
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 259.2
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 258.1
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 257.8
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 256.7
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 256.5
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 255.4
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 254.7
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 254.5
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 254.4
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 254.2
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 254.2
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 253.0
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 252.7
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 250.2
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 249.6
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 245.0
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 244.6
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 243.7
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 243.2
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 242.7
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 242.7
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 241.1
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 240.9
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 238.7
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 237.8
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 235.4
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 235.3
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 234.7
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 234.2
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 230.5
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 230.5
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 228.7
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 228.3
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 227.7
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 226.7
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 225.7
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 224.2
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 224.1
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 224.1
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 222.1
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 221.9
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 219.5
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 219.2
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 219.1
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 217.1
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 217.0
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 216.9
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 216.9
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 216.7
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 215.3
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 214.5
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 213.6
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 213.4
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 213.1
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 212.6
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 210.1
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 209.5
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 209.1
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 209.0
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 207.9
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 206.6
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 206.5
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 206.5
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 206.3
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 206.2
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 205.3
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 204.1
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 203.2
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 202.3
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 202.2
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 201.6
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 200.9
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 200.6
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 198.9
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 198.9
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 198.5
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 196.4
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 196.1
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 193.7
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 193.5
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 192.7
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 191.9
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 190.0
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 188.1
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 187.0
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 186.7
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 186.1
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 185.9
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 185.3
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 184.5
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 184.5
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 182.9
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 180.0
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 176.2
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 176.1
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 175.1
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 174.4
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 174.4
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 174.2
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 174.0
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 173.5
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 167.4
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 165.8
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 165.6
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 164.4
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 162.2
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 154.9
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 148.5
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 148.3
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

240.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 240.7
FF:10151-102I7 76 years, female 240.7

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

214.6
Pig sample Sample description nTPM
Amygdala
nTPM: 214.6
Samples: 4

Max nTPM: 285.1
Min nTPM: 186.0
Sample A Female 285.1
Sample B Female 193.0
Sample C Male 194.2
Sample D Male 186.0

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

443.4
Mouse sample Sample description nTPM
Amygdala
nTPM: 443.4
Samples: 4

Max nTPM: 470.5
Min nTPM: 417.1
Sample A Male 470.5
Sample B Male 454.9
Sample C Female 417.1
Sample D Female 430.9

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

24.9
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 24.9
199390 Antisense, RP_040507_02_D11, Mouse strain C57BL/6J (56 days, male) 28.0
77620391 Antisense, RP_070205_01_E12, Mouse strain C57BL/6J (56 days, male) 21.9
77414125 Antisense, RP_070205_01_E12, Mouse strain C57BL/6J (56 days, male) 20.1

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