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TISSUE PRIMARY DATA AMYGDALA Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Tissue proteome
Amygdala
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:66.8 nTPM
HPA Brain:247.5 nTPM
GTEx:66.8 nTPM
FANTOM5:197.4 Scaled Tags Per Million
Pig:28.2 nTPM
Mouse:10.7 nTPM
Allen mouse:0.2 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

247.5
Sample id Sample description nTPM
Amygdala
nTPM: 247.5
2695 Female, age 67, right hemisphere 480.9
2814 Male, age 76, right hemisphere 239.4
2517 Female, age 94, left hemisphere 196.6
1987 Female, age 91, left hemisphere 174.5
2514 Male, age 75, right hemisphere 146.2
Basal amygdala
nTPM: 201.4
2609 Male, age 75, right hemisphere 261.8
1955 Male, age 76, both hemispheres 219.2
2110 Male, age 80, left hemisphere 215.3
2827 Female, age 67, right hemisphere 177.0
2243 Female, age 91, right hemisphere 173.7
2685 Female, age 94, left hemisphere 161.4
Central amygdala
nTPM: 218.4
2515 Male, age 75, right hemisphere 267.2
1905 Male, age 76, both hemispheres 255.4
2826 Female, age 94, left hemisphere 209.6
2239 Male, age 80, left hemisphere 194.3
2701 Female, age 91, right hemisphere 165.6
Corticomedial amygdala
nTPM: 166.7
2428 Male, age 75, right hemisphere 209.5
2829 Male, age 80, left hemisphere 198.0
2240 Male, age 76, both hemispheres 180.8
2535 Female, age 67, right hemisphere 138.1
2429 Female, age 94, left hemisphere 137.0
2242 Female, age 91, right hemisphere 136.6
Lateral amygdala
nTPM: 209.7
2256 Male, age 80, left hemisphere 237.0
2516 Male, age 75, right hemisphere 230.9
2830 Female, age 67, right hemisphere 229.4
1883 Male, age 76, both hemispheres 228.1
2255 Female, age 91, right hemisphere 171.9
2534 Female, age 94, left hemisphere 160.9

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

66.8
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 66.8
Samples: 152

Max nTPM: 255.0
Min nTPM: 22.1
Std nTPM: 31.4
Median nTPM: 60.1
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 255.0
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 185.3
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 166.2
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 144.8
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 136.6
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 134.1
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 120.6
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 116.3
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 115.4
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 115.1
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 113.6
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 109.5
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 104.9
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 104.3
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 99.9
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 99.7
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 97.3
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 96.3
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 96.0
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 95.2
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 95.0
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 92.7
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 92.3
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 92.3
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 91.5
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 90.7
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 90.7
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 89.9
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 89.2
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 87.1
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 87.0
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 86.3
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 84.4
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 83.6
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 83.3
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 82.9
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 81.9
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 81.5
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 80.8
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 79.6
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 79.5
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 79.2
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 78.9
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 78.5
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 78.4
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 78.1
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 76.1
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 76.1
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 76.1
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 74.3
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 74.3
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 73.1
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 72.3
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 70.0
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 69.6
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 68.1
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 66.9
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 66.3
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 66.2
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 66.0
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 65.8
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 65.7
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 65.7
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 65.5
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 64.8
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 63.7
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 63.5
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 62.7
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 62.7
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 62.5
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 62.2
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 61.8
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 61.8
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 61.3
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 60.7
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 60.3
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 59.9
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 59.9
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 59.8
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 59.2
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 59.0
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 58.9
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 58.7
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 57.9
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 57.9
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 57.5
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 57.4
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 57.4
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 56.9
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 56.2
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 54.7
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 54.2
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 53.7
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 53.3
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 53.2
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 53.1
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 52.7
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 52.6
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 52.2
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 51.8
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 49.9
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 49.4
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 49.1
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 48.9
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 48.9
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 48.6
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 48.5
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 48.4
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 46.6
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 46.0
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 45.8
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 45.5
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 45.0
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 44.8
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 44.7
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 44.5
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 44.3
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 44.0
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 43.7
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 43.5
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 43.5
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 43.4
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 42.9
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 42.8
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 42.8
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 42.1
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 41.9
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 41.4
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 41.3
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 40.5
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 40.2
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 39.9
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 39.1
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 38.3
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 37.5
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 37.2
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 36.9
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 36.4
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 36.3
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 35.7
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 35.3
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 32.3
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 31.7
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 31.6
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 30.1
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 30.1
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 29.9
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 28.4
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 26.7
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 25.1
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 23.1
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 22.1
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

197.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 197.4
FF:10151-102I7 76 years, female 197.4

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

28.2
Pig sample Sample description nTPM
Amygdala
nTPM: 28.2
Samples: 4

Max nTPM: 32.9
Min nTPM: 24.3
Sample A Female 32.9
Sample B Female 24.3
Sample C Male 27.7
Sample D Male 28.0

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

10.7
Mouse sample Sample description nTPM
Amygdala
nTPM: 10.8
Samples: 4

Max nTPM: 12.3
Min nTPM: 9.7
Sample A Male 12.3
Sample B Male 9.7
Sample C Female 10.5
Sample D Female 10.5

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

0.2
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 0.2
69735640 Antisense, RP_050503_03_B11, Mouse strain C57BL/6J (56 days, male) 0.4
73520992 Antisense, RP_051101_02_G11, Mouse strain C57BL/6J (56 days, male) 0.0

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