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TISSUE PRIMARY DATA SPINAL CORD Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Tissue proteome
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:65.1 nTPM
HPA Brain:261.3 nTPM
GTEx:65.1 nTPM
FANTOM5:518.6 Scaled Tags Per Million
Pig:67.2 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

261.3
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 231.6
2048 Male, age 55, midline 264.2
2565 Male, age 75, midline 247.1
1981 Female, age 72, midline 241.4
2194 Female, age 79, both hemispheres 208.8
2816 Male, age 47, midline 196.4
Cervical spinal cord, dorsal horn
nTPM: 190.4
2173 Female, age 72, unknown 260.7
2721 Male, age 90, both hemispheres 201.3
1877 Male, age 55, unknown 183.9
2296 Male, age 66, both hemispheres 183.9
2069 Male, age 47, both hemispheres 177.7
2297 Male, age 75, both hemispheres 134.8
Cervical spinal cord, ventral horn
nTPM: 261.3
2809 Male, age 90, both hemispheres 365.7
2098 Female, age 72, unknown 274.6
2295 Male, age 66, both hemispheres 241.0
2820 Female, age 79, both hemispheres 233.2
2480 Male, age 75, both hemispheres 230.8
2068 Male, age 55, unknown 222.3

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

65.1
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 65.1
Samples: 159

Max nTPM: 155.3
Min nTPM: 26.6
Std nTPM: 20.4
Median nTPM: 61.6
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 155.3
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 138.9
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 123.2
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 121.8
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 114.7
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 109.6
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 104.6
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 101.7
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 99.9
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 96.2
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 94.4
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 94.1
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 92.6
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 92.5
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 92.4
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 90.7
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 89.3
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 89.0
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 88.4
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 85.5
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 85.4
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 84.0
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 81.8
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 81.7
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 81.6
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 81.6
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 81.5
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 81.3
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 81.2
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 80.7
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 80.6
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 80.5
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 79.9
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 79.8
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 79.2
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 78.7
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 78.5
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 78.1
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 78.0
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 76.5
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 76.3
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 75.9
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 75.4
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 75.3
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 74.6
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 74.4
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 73.2
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 72.5
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 72.3
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 72.2
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 72.2
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 70.8
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 70.5
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 70.4
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 70.3
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 69.8
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 69.3
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 69.3
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 69.2
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 68.9
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 68.4
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 68.0
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 67.9
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 67.6
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 67.4
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 67.1
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 66.3
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 66.2
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 66.1
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 66.0
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 65.8
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 64.2
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 63.8
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 63.0
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 62.8
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 62.4
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 62.4
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 62.0
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 61.8
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 61.6
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 61.3
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 61.0
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 60.7
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 60.4
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 60.0
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 59.8
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 59.8
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 59.6
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 59.4
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 59.3
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 59.2
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 58.4
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 58.2
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 58.1
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 57.9
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 57.0
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 56.1
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 56.1
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 56.0
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 55.9
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 55.8
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 55.5
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 55.5
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 55.5
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 55.5
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 55.0
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 54.8
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 54.4
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 54.4
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 54.3
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 54.2
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 53.4
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 53.0
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 52.8
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 52.4
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 52.2
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 52.2
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 52.2
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 52.0
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 51.9
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 51.5
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 51.0
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 51.0
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 51.0
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 50.3
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 47.9
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 47.8
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 47.7
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 47.6
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 47.4
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 46.6
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 46.1
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 45.9
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 45.8
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 45.5
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 45.4
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 45.3
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 44.4
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 44.0
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 43.7
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 43.2
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 42.0
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 42.0
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 40.6
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 40.0
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 39.7
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 39.7
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 39.5
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 39.1
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 38.6
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 38.5
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 38.1
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 37.7
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 37.6
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 36.9
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 36.8
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 36.1
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 26.7
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 26.6
Show allShow less

SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

518.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 518.6
FF:10159-103A6 76 years, female 524.8
FF:10181-103D1 60 years, female 512.4

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

67.2
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 54.7
Samples: 4

Max nTPM: 60.8
Min nTPM: 51.6
Sample A Female 52.7
Sample B Female 53.8
Sample C Male 60.8
Sample D Male 51.6
Ventral spinal cord
nTPM: 67.2
Samples: 4

Max nTPM: 73.6
Min nTPM: 64.1
Sample A Female 73.6
Sample B Female 65.6
Sample C Male 64.1
Sample D Male 65.6

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