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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:1232.7 nTPM
HPA Brain:714.3 nTPM
GTEx:1232.7 nTPM
FANTOM5:1119.9 Scaled Tags Per Million
Pig:797.1 nTPM
Mouse:2722.6 nTPM
Allen mouse:21.9 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

714.3
Sample id Sample description nTPM
Amygdala
nTPM: 714.3
2814 Male, age 76, right hemisphere 982.3
2514 Male, age 75, right hemisphere 760.9
2695 Female, age 67, right hemisphere 644.6
1987 Female, age 91, left hemisphere 594.6
2517 Female, age 94, left hemisphere 589.4
Basal amygdala
nTPM: 586.6
1955 Male, age 76, both hemispheres 709.0
2110 Male, age 80, left hemisphere 701.1
2609 Male, age 75, right hemisphere 623.7
2243 Female, age 91, right hemisphere 539.9
2685 Female, age 94, left hemisphere 526.7
2827 Female, age 67, right hemisphere 418.9
Central amygdala
nTPM: 623.7
1905 Male, age 76, both hemispheres 835.5
2826 Female, age 94, left hemisphere 602.7
2239 Male, age 80, left hemisphere 592.6
2515 Male, age 75, right hemisphere 550.9
2701 Female, age 91, right hemisphere 537.0
Corticomedial amygdala
nTPM: 599.0
2829 Male, age 80, left hemisphere 704.0
2240 Male, age 76, both hemispheres 659.7
2428 Male, age 75, right hemisphere 655.0
2429 Female, age 94, left hemisphere 654.9
2242 Female, age 91, right hemisphere 508.1
2535 Female, age 67, right hemisphere 412.1
Lateral amygdala
nTPM: 567.3
1883 Male, age 76, both hemispheres 859.7
2516 Male, age 75, right hemisphere 650.4
2534 Female, age 94, left hemisphere 594.0
2830 Female, age 67, right hemisphere 461.9
2256 Male, age 80, left hemisphere 454.8
2255 Female, age 91, right hemisphere 383.2

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1232.7
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 1232.7
Samples: 152

Max nTPM: 3202.4
Min nTPM: 632.6
Std nTPM: 404.7
Median nTPM: 1168.4
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 3202.4
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 2690.5
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 2604.3
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 2529.1
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 2353.9
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 2019.6
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 1975.1
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 1895.0
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 1893.7
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 1836.7
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 1800.8
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 1753.3
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 1715.8
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 1703.8
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 1692.3
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 1688.5
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 1677.5
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 1673.2
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 1670.3
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 1661.0
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 1617.8
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 1611.5
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 1589.3
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 1584.7
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 1567.7
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 1559.8
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 1551.9
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 1527.2
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 1526.2
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 1516.2
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 1500.4
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 1488.6
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 1467.1
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 1445.3
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 1433.2
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 1431.8
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 1425.7
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 1422.1
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 1406.3
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 1400.8
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 1394.5
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 1389.9
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 1384.8
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 1360.1
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 1347.8
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 1345.2
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 1333.2
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 1331.9
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 1292.8
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 1289.9
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 1288.3
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 1275.0
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 1274.4
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 1274.2
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 1247.1
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 1238.7
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 1237.3
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 1235.5
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 1231.0
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 1217.6
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 1215.4
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 1213.8
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 1209.7
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 1208.1
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 1205.5
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 1202.9
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 1194.3
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 1191.9
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 1191.5
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 1190.3
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 1189.3
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 1187.5
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 1182.4
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 1177.6
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 1173.4
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 1172.2
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 1164.7
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 1163.1
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 1153.5
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 1150.8
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 1141.9
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 1138.3
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 1136.8
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 1126.6
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 1123.3
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 1117.8
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 1116.6
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 1114.1
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 1112.5
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 1096.2
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 1096.1
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 1094.3
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 1085.9
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 1070.8
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 1067.2
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 1066.4
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 1064.3
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 1062.8
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 1060.2
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 1059.6
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 1056.0
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 1055.5
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 1055.4
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 1047.8
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 1035.6
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 1028.7
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 1015.9
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 1013.6
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 1002.2
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 994.9
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 989.4
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 987.8
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 981.0
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 968.7
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 967.4
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 965.8
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 952.2
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 937.7
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 927.8
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 926.5
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 926.4
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 909.6
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 900.8
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 900.4
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 897.7
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 879.4
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 878.9
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 867.1
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 860.4
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 856.5
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 851.7
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 847.0
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 844.1
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 833.4
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 828.9
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 827.2
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 823.1
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 795.8
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 779.7
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 775.4
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 763.9
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 753.4
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 752.8
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 748.6
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 740.6
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 725.2
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 722.4
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 722.1
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 682.6
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 678.1
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 669.8
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 632.6
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

1119.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 1119.9
FF:10151-102I7 76 years, female 1119.9

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

797.1
Pig sample Sample description nTPM
Amygdala
nTPM: 797.1
Samples: 4

Max nTPM: 1191.7
Min nTPM: 597.1
Sample A Female 1191.7
Sample B Female 758.7
Sample C Male 597.1
Sample D Male 640.9

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

2722.6
Mouse sample Sample description nTPM
Amygdala
nTPM: 2722.6
Samples: 4

Max nTPM: 2895.7
Min nTPM: 2561.8
Sample A Male 2639.1
Sample B Male 2895.7
Sample C Female 2793.9
Sample D Female 2561.8

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

21.9
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 21.9
183 Antisense, RP_Baylor_102653, Mouse strain C57BL/6J (56 days, male) 21.9
182 Antisense, RP_Baylor_102653, Mouse strain C57BL/6J (56 days, male) 21.5

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