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BRAIN BASAL GANGLIA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
Basal ganglia
BASAL GANGLIA - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: High
Neuronal cells: High
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:1105.5 nTPM
HPA Brain:790.1 nTPM
GTEx:1105.5 nTPM
FANTOM5:1607.1 Scaled Tags Per Million
Pig:1558.0 nTPM
Mouse:3662.5 nTPM
Allen mouse:21.0 Expression energy

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA044999Antibody CAB007790
Glial cells Not detectedHigh
Neuronal cells MediumHigh




BASAL GANGLIA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

790.1
Sample id Sample description nTPM
Caudate nucleus
nTPM: 790.1
2846 Female, age 79, unknown 1025.5
2481 Female, age 94, left hemisphere 901.7
1857 Female, age 85, left hemisphere 828.9
2288 Male, age 75, left hemisphere 789.0
2290 Female, age 72, unknown 753.4
1854 Male, age 80, left hemisphere 750.6
1781 Male, age 74, unknown 718.2
2289 Male, age 61, right hemisphere 553.6
Globus pallidus, externus
nTPM: 652.2
2772 Female, age 79, unknown 853.8
2395 Male, age 75, both hemispheres 836.7
1996 Male, age 80, right hemisphere 709.0
2646 Male, age 61, right hemisphere 433.3
2567 Female, age 72, unknown 428.2
Globus pallidus, internus
nTPM: 760.0
2287 Male, age 75, right hemisphere 1080.2
2778 Female, age 91, both hemispheres 903.9
2483 Female, age 94, right hemisphere 755.8
1818 Male, age 74, unknown 718.4
2037 Male, age 80, right hemisphere 676.4
2111 Female, age 85, right hemisphere 643.7
2566 Female, age 72, unknown 541.4
Nucleus accumbens
nTPM: 771.4
2391 Female, age 94, left hemisphere 1026.7
2286 Male, age 75, left hemisphere 862.8
1856 Female, age 91, right hemisphere 806.8
2824 Male, age 61, right hemisphere 805.5
2698 Female, age 72, unknown 746.3
1806 Female, age 85, left hemisphere 719.3
1783 Male, age 74, unknown 710.4
2732 Male, age 80, right hemisphere 493.4
Nucleus basalis of Meynert
nTPM: 629.3
2821 Male, age 75, both hemispheres 765.6
2393 Male, age 80, right hemisphere 740.0
2484 Female, age 94, left hemisphere 595.4
2569 Male, age 61, both hemispheres 416.0
Nucleus of the diagonal band
nTPM: 754.7
1812 Female, age 91, both hemispheres 944.5
2775 Male, age 80, right hemisphere 821.0
2029 Male, age 61, right hemisphere 813.7
2195 Female, age 85, both hemispheres 689.5
1979 Male, age 74, unknown 504.9
Putamen
nTPM: 726.7
2466 Female, age 79, unknown 931.7
1829 Male, age 74, unknown 890.1
1937 Female, age 91, right hemisphere 802.3
1838 Male, age 80, right hemisphere 792.0
2482 Female, age 94, left hemisphere 747.2
2647 Male, age 75, left hemisphere 497.5
2489 Female, age 72, unknown 426.0
Septal nuclei
nTPM: 653.5
2031 Female, age 72, unknown 915.9
2629 Female, age 94, right hemisphere 748.8
1960 Male, age 74, unknown 696.6
2009 Female, age 91, both hemispheres 693.4
2394 Male, age 61, left hemisphere 536.7
2199 Male, age 80, right hemisphere 510.0
2059 Female, age 85, both hemispheres 473.4
Stria terminalis, bed nucleus
nTPM: 636.8
1974 Female, age 91, both hemispheres 770.2
2486 Female, age 94, both hemispheres 651.9
2201 Male, age 74, unknown 488.1

BASAL GANGLIA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1105.5
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 1105.5
Samples: 246

Max nTPM: 2870.0
Min nTPM: 529.4
Std nTPM: 392.0
Median nTPM: 1008.1
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 2870.0
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 2685.1
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 2479.9
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 2139.0
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 2087.9
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 2075.7
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 2023.7
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 1938.7
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 1919.9
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 1917.6
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 1914.4
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 1880.3
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 1842.9
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 1804.2
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 1794.0
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 1788.0
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 1712.5
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 1711.9
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 1691.6
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 1679.4
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 1678.7
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 1671.5
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 1663.7
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 1643.2
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 1642.3
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 1609.3
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 1598.5
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 1591.5
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 1584.4
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 1583.0
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 1570.5
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 1561.3
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 1558.1
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 1547.1
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 1531.2
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 1474.9
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 1468.3
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 1455.3
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 1453.9
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 1449.5
GTEX-P44H-0011-R5A-SM-2XCEX 40-49 years, male 1440.3
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 1439.1
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 1437.6
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 1422.6
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 1419.3
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 1414.7
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 1412.8
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 1407.3
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 1400.7
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 1395.5
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 1393.4
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 1385.1
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 1375.3
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 1370.7
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 1366.8
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 1363.2
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 1359.8
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 1354.4
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 1344.6
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 1341.3
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 1332.9
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 1326.9
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 1316.7
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 1316.1
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 1316.0
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 1307.7
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 1306.0
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 1301.7
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 1297.0
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 1294.9
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 1293.3
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 1288.4
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 1285.7
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 1265.2
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 1247.7
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 1240.9
GTEX-S7SE-0011-R5A-SM-2XCDA 50-59 years, male 1240.4
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 1238.5
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 1237.0
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 1236.0
GTEX-UTHO-0011-R5A-SM-3GIJD 60-69 years, male 1234.7
GTEX-18464-0011-R5b-SM-718A6 50-59 years, male 1227.2
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 1226.5
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 1222.9
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 1206.2
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 1203.7
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 1182.3
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 1177.7
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 1158.8
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 1157.6
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 1151.3
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 1148.4
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 1139.8
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 1138.9
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 1134.2
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 1132.3
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 1132.1
GTEX-R55E-0011-R5A-SM-2TC5N 20-29 years, male 1127.8
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 1125.6
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 1116.7
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 1109.5
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 1106.5
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 1103.6
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 1102.0
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 1099.6
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 1096.8
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 1095.6
GTEX-RU72-0011-R5A-SM-2TF6U 50-59 years, female 1090.0
GTEX-P44G-0011-R5A-SM-2I3FA 30-39 years, male 1087.6
GTEX-N7MT-0011-R5a-SM-2I3G6 60-69 years, female 1084.1
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 1079.9
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 1075.9
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 1072.1
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 1059.0
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 1058.8
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 1056.7
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 1046.6
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 1021.6
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 1020.3
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 1016.2
GTEX-TSE9-0011-R5A-SM-3DB7J 60-69 years, female 1014.2
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 1012.6
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 1008.4
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 1007.7
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 1006.2
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 1005.8
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 1005.3
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 1001.2
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 997.9
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 997.5
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 994.5
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 989.4
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 981.5
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 981.4
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 976.7
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 973.8
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 973.6
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 970.2
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 968.0
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 967.5
GTEX-12WSH-0011-R5b-SM-5P9F3 50-59 years, male 964.0
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 962.6
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 952.3
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 948.8
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 946.4
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 940.0
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 937.9
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 937.0
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 932.5
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 926.1
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 925.2
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 923.1
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 921.1
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 918.7
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 914.2
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 914.1
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 911.0
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 904.3
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 903.8
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 898.7
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 898.5
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 895.9
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 889.8
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 889.0
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 885.3
GTEX-OXRN-0011-R5A-SM-2I5EF 50-59 years, male 885.1
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 877.9
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 877.6
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 876.3
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 875.0
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 873.9
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 866.6
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 863.4
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 862.9
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 853.9
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 853.7
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 852.7
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 851.5
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 847.3
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 843.8
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 841.3
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 834.5
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 831.9
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 824.2
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 819.6
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 814.8
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 809.9
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 803.0
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 792.7
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 790.7
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 789.3
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 785.7
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 783.9
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 778.2
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 777.2
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 763.2
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 759.6
GTEX-RVPV-0011-R5A-SM-2TF69 60-69 years, male 757.3
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 756.3
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 747.3
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 746.9
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 743.1
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 735.2
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 735.1
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 734.2
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 729.3
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 729.1
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 717.1
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 716.4
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 716.4
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 714.4
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 711.8
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 710.9
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 706.4
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 703.2
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 696.6
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 693.9
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 692.7
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 685.1
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 684.9
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 680.6
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 676.1
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 675.9
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 674.1
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 673.4
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 667.6
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 661.5
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 656.8
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 653.2
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 650.7
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 644.9
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 644.7
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 644.4
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 637.1
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 623.8
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 620.3
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 616.1
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 613.6
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 608.4
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 593.7
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 593.4
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 580.2
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 574.9
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 561.2
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 551.8
GTEX-OXRO-0011-R5A-SM-2I5EG 60-69 years, female 529.4
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 1071.3
Samples: 246

Max nTPM: 2238.4
Min nTPM: 463.8
Std nTPM: 285.7
Median nTPM: 1074.0
GTEX-1LVAO-0011-R6b-SM-EZ6MX 60-69 years, male 2238.4
GTEX-1A3MX-0011-R6a-SM-7P8S9 60-69 years, male 1869.2
GTEX-1C6WA-0011-R6a-SM-7PBYP 60-69 years, male 1817.9
GTEX-1B8L1-0011-R6b-SM-7P8SU 60-69 years, male 1811.0
GTEX-1AX9I-0011-R6a-SM-7P8PK 60-69 years, male 1672.8
GTEX-1EKGG-0011-R6a-SM-CL538 60-69 years, male 1647.3
GTEX-1HFI6-0011-R6b-SM-CM2SR 40-49 years, male 1641.2
GTEX-12WSC-0011-R6b-SM-5LU99 50-59 years, male 1636.5
GTEX-1I1GR-0011-R6a-SM-CMKHI 60-69 years, male 1634.5
GTEX-14E7W-0011-R6b-SM-5ZZV3 70-79 years, male 1595.5
GTEX-11OF3-0011-R6b-SM-57WBG 60-69 years, male 1585.4
GTEX-1313W-0011-R6a-SM-5K7XO 50-59 years, female 1572.0
GTEX-T6MN-0011-R6A-SM-32QP8 50-59 years, male 1570.0
GTEX-1F7RK-0011-R6b-SM-ARZMG 20-29 years, female 1566.3
GTEX-13O3Q-0011-R6a-SM-5KM2V 50-59 years, male 1561.2
GTEX-131XH-0011-R6a-SM-5KM2G 50-59 years, male 1554.9
GTEX-147F4-0011-R6b-SM-5S2UP 50-59 years, male 1554.4
GTEX-139TT-0011-R6b-SM-5J2ON 60-69 years, male 1541.4
GTEX-1HT8W-0011-R6a-SM-CM2SY 30-39 years, male 1533.0
GTEX-1OJC4-0011-R6a-SM-EXOIM 50-59 years, female 1475.9
GTEX-12WSF-0011-R6b-SM-5HL8W 70-79 years, male 1473.6
GTEX-11NV4-0011-R6a-SM-57WD5 60-69 years, male 1465.0
GTEX-17EVP-0011-R6b-SM-7LT99 40-49 years, male 1455.7
GTEX-13X6J-0011-R6a-SM-5PNUB 50-59 years, male 1443.8
GTEX-1MJK2-0011-R6a-SM-EXUS3 50-59 years, male 1436.2
GTEX-Q2AG-0011-R6A-SM-2HML7 40-49 years, female 1419.7
GTEX-14BIM-0011-R6b-SM-5S2VB 60-69 years, female 1417.5
GTEX-14PJM-0011-R6a-SM-6872G 50-59 years, female 1404.9
GTEX-UTHO-0011-R6A-SM-3GIJW 60-69 years, male 1404.5
GTEX-11DYG-0011-R6a-SM-DO936 60-69 years, male 1400.3
GTEX-11DXY-0011-R6a-SM-DNZZF 60-69 years, male 1397.7
GTEX-T2IS-0011-R6A-SM-32QP2 20-29 years, female 1395.1
GTEX-X585-0011-R6A-SM-46MVJ 50-59 years, male 1392.0
GTEX-WWYW-0011-R6A-SM-3NB3G 50-59 years, female 1388.6
GTEX-145LS-0011-R6b-SM-5PNWL 60-69 years, female 1387.8
GTEX-1GZ4I-0011-R6b-SM-9WG77 50-59 years, male 1386.5
GTEX-1F75A-0011-R6b-SM-9QEHD 50-59 years, male 1382.7
GTEX-12ZZZ-0011-R6b-SM-5EQ5B 60-69 years, male 1377.2
GTEX-11DZ1-0011-R6b-SM-DNZZG 50-59 years, male 1376.7
GTEX-1IY9M-0011-R6a-SM-D4P28 60-69 years, male 1368.6
GTEX-1F6IF-0011-R6a-SM-9QEIO 60-69 years, male 1363.6
GTEX-1IDJH-0011-R6a-SM-A9SLZ 70-79 years, male 1359.6
GTEX-12ZZX-0011-R6a-SM-5HL8L 40-49 years, female 1328.8
GTEX-14JIY-0011-R6b-SM-68714 60-69 years, male 1328.5
GTEX-T5JC-0011-R6A-SM-D3L87 20-29 years, male 1328.0
GTEX-QMR6-0011-R6A-SM-32PKP 50-59 years, male 1326.7
GTEX-12WSH-0011-R6b-SM-5P9F4 50-59 years, male 1313.4
GTEX-S7SE-0011-R6A-SM-2XCD9 50-59 years, male 1312.2
GTEX-1EX96-0011-R6a-SM-9OSVV 50-59 years, male 1311.7
GTEX-14C5O-0011-R6a-SM-5YYB6 60-69 years, male 1298.3
GTEX-13G51-0011-R6b-SM-5LZX4 60-69 years, male 1285.9
GTEX-N7MS-0011-R6a-SM-2HMJ4 60-69 years, male 1281.8
GTEX-1EMGI-0011-R6a-SM-9OSVR 60-69 years, male 1275.2
GTEX-WHSE-0011-R6A-SM-3P5ZP 20-29 years, male 1265.1
GTEX-WZTO-0011-R6B-SM-4E3J6 40-49 years, male 1262.5
GTEX-13FLW-0011-R6b-SM-5L3EN 50-59 years, male 1261.2
GTEX-1B8SF-0011-R6b-SM-7MXUD 60-69 years, male 1260.3
GTEX-Z93S-0011-R6b-SM-4RGNJ 50-59 years, male 1249.9
GTEX-ZUA1-0011-R6b-SM-4YCDD 40-49 years, male 1246.7
GTEX-14JG1-0011-R6b-SM-5YYAU 40-49 years, male 1246.4
GTEX-13VXU-0011-R6a-SM-5SI71 50-59 years, male 1237.3
GTEX-1J8Q2-0011-R6a-SM-CKZPG 60-69 years, male 1231.0
GTEX-15ER7-0011-R6a-SM-6M46M 20-29 years, female 1228.3
GTEX-1LVA9-0011-R6a-SM-EYYWH 50-59 years, male 1215.5
GTEX-1HBPH-0011-R6a-SM-CKZOV 40-49 years, female 1213.4
GTEX-14ABY-0011-R6a-SM-5PNWR 50-59 years, male 1213.1
GTEX-1ICLZ-0011-R6b-SM-A9G3A 60-69 years, male 1212.1
GTEX-14BIN-0011-R6a-SM-5S2RH 50-59 years, female 1206.3
GTEX-18A6Q-0011-R6a-SM-7LG6R 60-69 years, male 1199.0
GTEX-NL3H-0011-R6a-SM-2I3G8 60-69 years, male 1194.5
GTEX-14BMV-0011-R6b-SM-5YY9I 50-59 years, male 1192.6
GTEX-1GZ2Q-0011-R6a-SM-9OSWM 40-49 years, male 1192.0
GTEX-R55E-0011-R6A-SM-2TC5T 20-29 years, male 1184.9
GTEX-16YQH-0011-R6b-SM-7938T 30-39 years, male 1182.3
GTEX-14LZ3-0011-R6a-SM-D3L8C 60-69 years, female 1178.2
GTEX-1I1CD-0011-R6b-SM-CJI3Y 60-69 years, female 1177.2
GTEX-17HG3-0011-R6b-SM-79OK8 30-39 years, female 1174.4
GTEX-12ZZY-0011-R6b-SM-5EGLA 60-69 years, male 1173.0
GTEX-TSE9-0011-R6A-SM-3DB7L 60-69 years, female 1172.3
GTEX-1HB9E-0011-R6b-SM-A9G1P 50-59 years, male 1165.2
GTEX-13RTJ-0011-R6a-SM-5SI74 60-69 years, male 1164.8
GTEX-1GF9W-0011-R6b-SM-9QEIE 60-69 years, male 1161.2
GTEX-11TTK-0011-R6b-SM-DNZZW 60-69 years, female 1160.0
GTEX-1HUB1-0011-R6b-SM-ARU6W 60-69 years, male 1157.2
GTEX-1GN1U-0011-R6a-SM-CKZNO 50-59 years, female 1156.9
GTEX-11PRG-0011-R6b-SM-DO923 50-59 years, male 1155.5
GTEX-18464-0011-R6a-SM-731CA 50-59 years, male 1152.4
GTEX-15DYW-0011-R6b-SM-6PALA 60-69 years, female 1152.1
GTEX-1GTWX-0011-R6a-SM-A96RN 60-69 years, male 1148.4
GTEX-1192X-0011-R6a-SM-DNZZB 50-59 years, male 1147.1
GTEX-1B933-0011-R6b-SM-79OOQ 50-59 years, female 1142.7
GTEX-1399T-0011-R6b-SM-5K7YL 60-69 years, male 1141.7
GTEX-13OVL-0011-R6a-SM-5L3G4 50-59 years, male 1139.9
GTEX-1H1ZS-0011-R6b-SM-A9G1F 70-79 years, male 1139.3
GTEX-13NYB-0011-R6b-SM-5MR51 40-49 years, male 1134.4
GTEX-145MH-0011-R6a-SM-5PNZ7 50-59 years, male 1129.9
GTEX-15RJE-0011-R6a-SM-7DHL8 40-49 years, male 1129.9
GTEX-P44G-0011-R6A-SM-2XCD3 30-39 years, male 1129.8
GTEX-1GF9V-0011-R6b-SM-CJI2Q 60-69 years, male 1127.4
GTEX-1I1GQ-0011-R6b-SM-CE6SE 50-59 years, male 1126.0
GTEX-WVLH-0011-R6A-SM-3MJFZ 50-59 years, male 1123.9
GTEX-NPJ7-0011-R6a-SM-2I3G7 60-69 years, female 1122.9
GTEX-14ASI-0011-R6a-SM-5S2UZ 60-69 years, male 1119.7
GTEX-13O3O-0011-R6b-SM-5P9GY 60-69 years, female 1116.8
GTEX-13FLV-0011-R6a-SM-5KLZ4 50-59 years, male 1111.9
GTEX-1IKK5-0011-R6b-SM-A9SLY 60-69 years, male 1109.8
GTEX-11NUK-0011-R6a-SM-DO93O 50-59 years, male 1109.2
GTEX-15CHQ-0011-R6b-SM-69LOX 60-69 years, male 1107.9
GTEX-1JMLX-0011-R6b-SM-EXUT9 50-59 years, male 1103.7
GTEX-1GN73-0011-R6b-SM-CJI2T 60-69 years, male 1101.3
GTEX-ZAB4-0011-R6a-SM-4SOKD 40-49 years, male 1098.9
GTEX-1LH75-0011-R6a-SM-EXURS 50-59 years, female 1094.9
GTEX-13FXS-0011-R6b-SM-5L3F7 50-59 years, male 1094.3
GTEX-XLM4-0011-R6A-SM-4AT4B 60-69 years, male 1093.5
GTEX-1I1GV-0011-R6b-SM-ARU6Q 60-69 years, male 1091.5
GTEX-13N1W-0011-R6a-SM-5MR43 70-79 years, male 1089.6
GTEX-13S7M-0011-R6b-SM-5O9D8 60-69 years, female 1081.6
GTEX-13NYS-0011-R6b-SM-5MR3R 60-69 years, male 1081.3
GTEX-1F75W-0011-R6a-SM-9QEI5 60-69 years, male 1079.8
GTEX-12WSM-0011-R6b-SM-5EQ6N 60-69 years, male 1077.4
GTEX-YFC4-0011-R6b-SM-4V6E1 40-49 years, female 1075.8
GTEX-1HR9M-0011-R6a-SM-ARU6Z 60-69 years, male 1075.1
GTEX-1H1DG-0011-R6a-SM-A9SK8 70-79 years, male 1074.8
GTEX-13FHO-0011-R6b-SM-5LZX1 60-69 years, male 1073.2
GTEX-X4EP-0011-R6A-SM-3P629 60-69 years, female 1070.3
GTEX-ZXG5-0011-R6a-SM-57WBZ 60-69 years, male 1067.3
GTEX-1E1VI-0011-R6a-SM-9OSVJ 50-59 years, male 1060.1
GTEX-11DXW-0011-R6a-SM-DO11N 40-49 years, male 1059.4
GTEX-13X6K-0011-R6a-SM-5P9K6 60-69 years, female 1058.5
GTEX-13SLX-0011-R6a-SM-5PNX4 50-59 years, female 1053.6
GTEX-147GR-0011-R6b-SM-5S2RO 60-69 years, male 1053.4
GTEX-N7MT-0011-R6a-SM-2I3G3 60-69 years, female 1047.8
GTEX-1F6I4-0011-R6a-SM-CE6R4 60-69 years, male 1047.4
GTEX-12WSD-0011-R6b-SM-5P9JU 60-69 years, female 1047.1
GTEX-14753-0011-R6b-SM-5S2UD 60-69 years, male 1046.9
GTEX-1N2DW-0011-R6a-SM-EZ6MW 50-59 years, male 1045.4
GTEX-WL46-0011-R6A-SM-3LK6X 50-59 years, male 1045.2
GTEX-1C6VR-0011-R6a-SM-7MXU8 60-69 years, male 1040.3
GTEX-15DCD-0011-R6b-SM-6M46L 70-79 years, female 1032.4
GTEX-YJ89-0011-R6a-SM-4V6GN 60-69 years, male 1029.9
GTEX-RU72-0011-R6A-SM-2TF71 50-59 years, female 1023.5
GTEX-1HGF4-0011-R6a-SM-A96S1 60-69 years, male 1022.0
GTEX-13OW6-0011-R6b-SM-5L3GR 50-59 years, male 1021.9
GTEX-Y8DK-0011-R6A-SM-4V6EG 60-69 years, male 1020.8
GTEX-1LC47-0011-R6b-SM-EZ6MI 60-69 years, male 1020.7
GTEX-QVUS-0011-R6A-SM-3GACX 60-69 years, female 1015.9
GTEX-1MA7X-0011-R6a-SM-EYYWR 60-69 years, male 1015.0
GTEX-132Q8-0011-R6a-SM-5K7YN 60-69 years, male 1014.2
GTEX-1GMR8-0011-R6b-SM-CE6RC 50-59 years, female 1011.8
GTEX-14PN4-0011-R6b-SM-69LQU 50-59 years, male 1002.8
GTEX-1H3O1-0011-R6b-SM-CL54U 60-69 years, male 1000.4
GTEX-12WSE-0011-R6b-SM-5LZV5 20-29 years, male 999.8
GTEX-X4XX-0011-R6B-SM-46MWP 60-69 years, male 999.6
GTEX-1H1CY-0011-R6b-SM-CE6RP 60-69 years, female 998.7
GTEX-ZE9C-0011-R6a-SM-4WWCW 60-69 years, male 997.7
GTEX-13112-0011-R6b-SM-5DUVK 50-59 years, male 993.9
GTEX-NPJ8-0011-R6a-SM-2HMKB 40-49 years, male 980.2
GTEX-QVJO-0011-R6A-SM-2S1QN 60-69 years, female 976.7
GTEX-ZDXO-0011-R6a-SM-4WWCT 60-69 years, male 970.4
GTEX-1CB4G-0011-R6b-SM-9QEGO 60-69 years, male 965.6
GTEX-1JJEA-0011-R6a-SM-EXUS1 60-69 years, male 964.1
GTEX-17F97-0011-R6a-SM-7EPGS 50-59 years, male 960.3
GTEX-13QJC-0011-R6a-SM-5S2VI 60-69 years, female 958.7
GTEX-12ZZW-0011-R6a-SM-5DUVZ 50-59 years, male 946.0
GTEX-ZV68-0011-R6a-SM-51MSR 50-59 years, female 944.1
GTEX-11GSP-0011-R6b-SM-57WBQ 60-69 years, female 940.7
GTEX-11WQC-0011-R6a-SM-5BC77 60-69 years, male 937.4
GTEX-1H3NZ-0011-R6b-SM-A9G1N 60-69 years, male 933.0
GTEX-1EN7A-0011-R6b-SM-9QEHW 40-49 years, male 929.4
GTEX-1B996-0011-R6b-SM-793AQ 60-69 years, male 925.0
GTEX-17MF6-0011-R6b-SM-7LG6G 40-49 years, male 919.5
GTEX-144GO-0011-R6b-SM-5S2V7 60-69 years, male 919.1
GTEX-1HBPI-0011-R6b-SM-A9G1T 50-59 years, male 911.0
GTEX-183WM-0011-R6b-SM-72D66 70-79 years, female 905.9
GTEX-11ONC-0011-R6a-SM-DO12A 60-69 years, male 901.6
GTEX-ZVZQ-0011-R6b-SM-57WAY 60-69 years, female 885.6
GTEX-P44H-0011-R6A-SM-2XCF3 40-49 years, male 879.5
GTEX-1BAJH-0011-R6b-SM-7MXT2 70-79 years, male 878.7
GTEX-X4XY-0011-R6B-SM-46MVB 60-69 years, male 875.8
GTEX-13OW5-0011-R6b-SM-5O9BW 60-69 years, male 872.9
GTEX-17HHY-0011-R6b-SM-7189Z 50-59 years, male 858.2
GTEX-1I19N-0011-R6b-SM-CY8GC 70-79 years, male 857.1
GTEX-13JUV-0011-R6b-SM-5LZYG 40-49 years, female 854.9
GTEX-11O72-0011-R6a-SM-DNZZQ 40-49 years, male 854.9
GTEX-17JCI-0011-R6a-SM-72D6D 60-69 years, female 846.2
GTEX-1445S-0011-R6b-SM-5PNUF 60-69 years, male 834.1
GTEX-15EO6-0011-R6a-SM-7KULK 50-59 years, male 833.0
GTEX-18465-0011-R6a-SM-7LG6M 50-59 years, male 824.1
GTEX-QDT8-0011-R6A-SM-32PKI 30-39 years, female 820.9
GTEX-XMD1-0011-R6A-SM-4AT5K 60-69 years, male 809.7
GTEX-145LU-0011-R6a-SM-5S2V6 50-59 years, male 808.8
GTEX-1J1OQ-0011-R6a-SM-ARU86 40-49 years, female 805.0
GTEX-13FHP-0011-R6b-SM-5LZY6 50-59 years, male 804.2
GTEX-1F48J-0011-R6a-SM-CJI2F 50-59 years, female 803.7
GTEX-1IGQW-0011-R6a-SM-CM2TC 60-69 years, male 800.5
GTEX-1I1HK-0011-R6b-SM-CM2T9 60-69 years, male 797.2
GTEX-X261-0011-R6B-SM-4E3J8 50-59 years, male 796.0
GTEX-1EH9U-0011-R6a-SM-CJI2C 60-69 years, male 795.2
GTEX-1CB4H-0011-R6b-SM-CKZNK 60-69 years, female 794.6
GTEX-144GL-0011-R6a-SM-5P9HW 50-59 years, male 791.7
GTEX-15G19-0011-R6b-SM-7KUM3 60-69 years, male 789.7
GTEX-1I1GS-0011-R6b-SM-CMKHE 60-69 years, male 788.8
GTEX-ZF28-0011-R6a-SM-4WKHI 60-69 years, male 787.6
GTEX-1GN2E-0011-R6b-SM-9QEII 60-69 years, male 784.4
GTEX-13JVG-0011-R6a-SM-5MR3E 60-69 years, male 783.7
GTEX-NL4W-0011-R6a-SM-2I3GA 50-59 years, male 781.4
GTEX-1F75B-0011-R6a-SM-ARZMI 50-59 years, male 765.7
GTEX-14PQA-0011-R6b-SM-6AJAM 50-59 years, female 764.3
GTEX-ZE7O-0011-R6a-SM-57WCI 50-59 years, female 757.3
GTEX-1A8G6-0011-R6b-SM-7P8PE 60-69 years, male 757.2
GTEX-13SLW-0011-R6a-SM-5O9BH 70-79 years, male 756.0
GTEX-1IKOH-0011-R6b-SM-A9G1W 60-69 years, female 752.8
GTEX-ZVT3-0011-R6a-SM-51MSU 60-69 years, female 749.9
GTEX-13N2G-0011-R6b-SM-5MR3P 60-69 years, male 741.7
GTEX-1H4P4-0011-R6a-SM-ARZLR 50-59 years, male 728.5
GTEX-13OW8-0011-R6b-SM-5L3I3 60-69 years, male 727.8
GTEX-13IVO-0011-R6b-SM-5K7X9 70-79 years, male 722.6
GTEX-1F88E-0011-R6a-SM-CKZNW 60-69 years, female 720.4
GTEX-13PL6-0011-R6a-SM-5O9C5 40-49 years, female 717.1
GTEX-1H23P-0011-R6b-SM-A9G1H 60-69 years, male 714.5
GTEX-139TS-0011-R6a-SM-5J2OB 60-69 years, male 714.0
GTEX-1R46S-0011-R6a-SM-EZ6N6 60-69 years, female 707.6
GTEX-13OVH-0011-R6b-SM-5LUAX 70-79 years, male 705.4
GTEX-1GZHY-0011-R6a-SM-9OSWL 50-59 years, female 703.5
GTEX-131XW-0011-R6b-SM-5K7XY 50-59 years, female 703.2
GTEX-16XZZ-0011-R6a-SM-7IGNE 60-69 years, male 702.1
GTEX-S7PM-0011-R6A-SM-3NM8F 60-69 years, male 695.6
GTEX-1IL2U-0011-R6a-SM-ARZLG 60-69 years, male 685.0
GTEX-1RLM8-0011-R6a-SM-EYYXS 50-59 years, male 667.9
GTEX-1GMRU-0011-R6b-SM-A9G3B 50-59 years, male 666.9
GTEX-16Z82-0011-R6a-SM-7IGLV 60-69 years, male 660.9
GTEX-1LB8K-0011-R6a-SM-EXURT 50-59 years, male 659.2
GTEX-PWO3-0011-R6A-SM-2I5F3 60-69 years, female 655.9
GTEX-14PHW-0011-R6b-SM-5YYAR 60-69 years, female 652.7
GTEX-145MI-0011-R6a-SM-5PNZA 60-69 years, female 650.5
GTEX-13OVJ-0011-R6b-SM-5L3GH 50-59 years, female 637.8
GTEX-13PDP-0011-R6b-SM-5O9D5 60-69 years, male 632.9
GTEX-12584-0011-R6a-SM-5NQ7C 40-49 years, male 601.2
GTEX-1HBPM-0011-R6b-SM-ARU73 60-69 years, female 596.4
GTEX-OHPN-0011-R6A-SM-2I5FH 60-69 years, female 593.2
GTEX-1C64N-0011-R6a-SM-7IGO9 50-59 years, male 572.0
GTEX-17EVQ-0011-R6a-SM-7189U 70-79 years, male 563.6
GTEX-1E2YA-0011-R6b-SM-CE6R2 50-59 years, male 560.2
GTEX-1EWIQ-0011-R6a-SM-ARU8G 70-79 years, female 540.5
GTEX-1CB4J-0011-R6b-SM-9WG7B 60-69 years, male 513.8
GTEX-1H3VE-0011-R6b-SM-A9G1M 40-49 years, male 463.8
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Brain - Putamen (basal ganglia)
Average nTPM: 1095.2
Samples: 205

Max nTPM: 2692.0
Min nTPM: 500.6
Std nTPM: 362.4
Median nTPM: 1034.3
GTEX-16YQH-0011-R7a-SM-79ON1 30-39 years, male 2692.0
GTEX-1C6WA-0011-R7b-SM-7P8S8 60-69 years, male 2337.0
GTEX-1AX9I-0011-R7b-SM-7P8Q3 60-69 years, male 2222.0
GTEX-RNOR-0011-R7A-SM-2TF4V 50-59 years, female 2071.6
GTEX-1ICLZ-0011-R7a-SM-ARZLU 60-69 years, male 1978.1
GTEX-1EMGI-0011-R7b-SM-9QEH5 60-69 years, male 1960.9
GTEX-1313W-0011-R7b-SM-5DUWL 50-59 years, female 1763.5
GTEX-WHSE-0011-R7A-SM-3P5YZ 20-29 years, male 1753.6
GTEX-12WSI-0011-R7b-SM-5GU78 50-59 years, male 1752.7
GTEX-13O3Q-0011-R7a-SM-5KM38 50-59 years, male 1739.1
GTEX-11PRG-0011-R7a-SM-DNZZT 50-59 years, male 1736.5
GTEX-1IY9M-0011-R7a-SM-D4P49 60-69 years, male 1700.0
GTEX-WL46-0011-R7A-SM-3LK7X 50-59 years, male 1689.4
GTEX-14C5O-0011-R7b-SM-5YYAH 60-69 years, male 1660.1
GTEX-1HFI6-0011-R7b-SM-CM2SS 40-49 years, male 1642.2
GTEX-T5JC-0011-R7A-SM-32PME 20-29 years, male 1631.1
GTEX-13G51-0011-R7b-SM-5LZXG 60-69 years, male 1611.8
GTEX-1HB9E-0011-R7b-SM-A9G1Q 50-59 years, male 1610.1
GTEX-S7SE-0011-R7A-SM-2XCDI 50-59 years, male 1601.5
GTEX-T6MN-0011-R7A-SM-32QP5 50-59 years, male 1599.7
GTEX-13CF2-0011-R7b-SM-5K7UV 60-69 years, male 1577.0
GTEX-1IDJH-0011-R7a-SM-A9SM1 70-79 years, male 1574.8
GTEX-15CHQ-0011-R7b-SM-D4P1Q 60-69 years, male 1564.6
GTEX-Z93S-0011-R7b-SM-4RGNK 50-59 years, male 1561.2
GTEX-ZUA1-0011-R7b-SM-4YCDP 40-49 years, male 1555.2
GTEX-11DYG-0011-R7b-SM-EXUS6 60-69 years, male 1527.6
GTEX-1LVAO-0011-R7a-SM-EYYWZ 60-69 years, male 1527.2
GTEX-131YS-0011-R7a-SM-5IJDA 60-69 years, female 1519.7
GTEX-11OF3-0011-R7a-SM-57WCG 60-69 years, male 1468.4
GTEX-12WSC-0011-R7b-SM-5LU9L 50-59 years, male 1464.5
GTEX-1B8L1-0011-R7b-SM-9OSVK 60-69 years, male 1444.1
GTEX-139TT-0011-R7b-SM-5J2MN 60-69 years, male 1440.2
GTEX-145LS-0011-R7a-SM-5PNWM 60-69 years, female 1439.3
GTEX-1B933-0011-R7a-SM-7DUGX 50-59 years, female 1433.0
GTEX-XLM4-0011-R7A-SM-4AT5L 60-69 years, male 1432.3
GTEX-11NV4-0011-R7a-SM-57WDH 60-69 years, male 1429.5
GTEX-145MH-0011-R7a-SM-5PNWH 50-59 years, male 1427.9
GTEX-1B996-0011-R7b-SM-7IGNT 60-69 years, male 1425.3
GTEX-1HT8W-0011-R7b-SM-CMKH8 30-39 years, male 1421.0
GTEX-14PN4-0011-R7b-SM-69LQQ 50-59 years, male 1413.9
GTEX-QDT8-0011-R7A-SM-32PKF 30-39 years, female 1408.1
GTEX-1F75A-0011-R7b-SM-9QEHE 50-59 years, male 1387.6
GTEX-15ER7-0011-R7a-SM-6M46N 20-29 years, female 1381.6
GTEX-1H3O1-0011-R7a-SM-CE6SJ 60-69 years, male 1380.9
GTEX-QVJO-0011-R7A-SM-2S1QO 60-69 years, female 1373.5
GTEX-11ONC-0011-R7b-SM-DO93J 60-69 years, male 1371.4
GTEX-1EKGG-0011-R7a-SM-CKZNN 60-69 years, male 1360.1
GTEX-11DZ1-0011-R7a-SM-DNZZH 50-59 years, male 1353.4
GTEX-13RTJ-0011-R7b-SM-5P9JS 60-69 years, male 1347.7
GTEX-1I1CD-0011-R7a-SM-CMKHA 60-69 years, female 1341.8
GTEX-13N1W-0011-R7b-SM-5MR4F 70-79 years, male 1340.8
GTEX-13X6J-0011-R7b-SM-5PNUC 50-59 years, male 1325.4
GTEX-11TTK-0011-R7b-SM-DNZZZ 60-69 years, female 1324.3
GTEX-1GN73-0011-R7a-SM-CJI2U 60-69 years, male 1317.1
GTEX-14ABY-0011-R7b-SM-5PNWS 50-59 years, male 1312.7
GTEX-ZAB4-0011-R7a-SM-4SOKE 40-49 years, male 1304.7
GTEX-1I1GQ-0011-R7a-SM-CJI41 50-59 years, male 1292.3
GTEX-1GTWX-0011-R7a-SM-A96RO 60-69 years, male 1284.5
GTEX-14E7W-0011-R7b-SM-5ZZV4 70-79 years, male 1266.1
GTEX-17EVP-0011-R7a-SM-7LTAN 40-49 years, male 1260.8
GTEX-ZVZQ-0011-R7b-SM-57WBB 60-69 years, female 1258.5
GTEX-12ZZZ-0011-R7b-SM-5EGLE 60-69 years, male 1257.8
GTEX-RU72-0011-R7A-SM-2TF5U 50-59 years, female 1251.4
GTEX-15RJE-0011-R7a-SM-7DHL9 40-49 years, male 1249.5
GTEX-N7MT-0011-R7a-SM-2I3FZ 60-69 years, female 1245.8
GTEX-WWYW-0011-R7A-SM-3NB3H 50-59 years, female 1232.2
GTEX-11DXY-0011-R7a-SM-DO11L 60-69 years, male 1221.2
GTEX-1IKK5-0011-R7b-SM-A9G39 60-69 years, male 1215.3
GTEX-13FLW-0011-R7b-SM-5L3EZ 50-59 years, male 1212.0
GTEX-Q2AG-0011-R7A-SM-2HMJP 40-49 years, female 1199.2
GTEX-1LH75-0011-R7a-SM-EXOIF 50-59 years, female 1195.1
GTEX-13X6K-0011-R7b-SM-5P9K7 60-69 years, female 1184.1
GTEX-13O3O-0011-R7b-SM-5P9GZ 60-69 years, female 1166.7
GTEX-1HCU6-0011-R7b-SM-ARL77 60-69 years, female 1165.5
GTEX-N7MS-0011-R7a-SM-2HMKN 60-69 years, male 1155.5
GTEX-14PJO-0011-R7a-SM-664NR 60-69 years, male 1154.4
GTEX-WZTO-0011-R7B-SM-4E3IS 40-49 years, male 1149.8
GTEX-13FLV-0011-R7b-SM-5K7WW 50-59 years, male 1144.7
GTEX-1HCVE-0011-R7b-SM-A9G1I 50-59 years, male 1144.5
GTEX-11GSP-0011-R7b-SM-57WC3 60-69 years, female 1133.8
GTEX-1JJ6O-0011-R7b-SM-EXUTB 60-69 years, male 1131.1
GTEX-R55E-0011-R7A-SM-2TC5Z 20-29 years, male 1130.4
GTEX-1IKJJ-0011-R7a-SM-ARZLH 60-69 years, male 1127.0
GTEX-13OW6-0011-R7b-SM-5L3H4 50-59 years, male 1123.8
GTEX-12ZZW-0011-R7a-SM-5DUWC 50-59 years, male 1111.6
GTEX-13X6I-0011-R7b-SM-5PNWP 60-69 years, male 1108.7
GTEX-12WSF-0011-R7b-SM-5HL99 70-79 years, male 1101.5
GTEX-TSE9-0011-R7A-SM-3DB7P 60-69 years, female 1077.9
GTEX-P44G-0011-R7A-SM-2I3F9 30-39 years, male 1072.3
GTEX-17MF6-0011-R7b-SM-7LG6J 40-49 years, male 1071.2
GTEX-15EO6-0011-R7a-SM-6M46Q 50-59 years, male 1069.4
GTEX-12ZZY-0011-R7a-SM-5EGLB 60-69 years, male 1069.2
GTEX-1LSNL-0011-R7a-SM-EYYWI 50-59 years, male 1065.3
GTEX-1J8Q2-0011-R7a-SM-CKZPF 60-69 years, male 1061.5
GTEX-1MJK2-0011-R7a-SM-EXUS4 50-59 years, male 1059.6
GTEX-12WSM-0011-R7b-SM-5EGLD 60-69 years, male 1056.4
GTEX-1H1ZS-0011-R7a-SM-CL54P 70-79 years, male 1049.9
GTEX-1EX96-0011-R7a-SM-9OSVW 50-59 years, male 1043.7
GTEX-14PJM-0011-R7a-SM-6AJBX 50-59 years, female 1042.0
GTEX-1HGF4-0011-R7a-SM-A96S2 60-69 years, male 1041.8
GTEX-1192X-0011-R7b-SM-DNZZC 50-59 years, male 1038.3
GTEX-15DYW-0011-R7a-SM-7KULG 60-69 years, female 1035.6
GTEX-1OJC4-0011-R7a-SM-EYYX4 50-59 years, female 1034.3
GTEX-1CB4G-0011-R7b-SM-9QEGP 60-69 years, male 1031.5
GTEX-13VXU-0011-R7b-SM-5SI72 50-59 years, male 1022.5
GTEX-1F75W-0011-R7a-SM-9QEI6 60-69 years, male 1022.0
GTEX-14ASI-0011-R7b-SM-5YY9G 60-69 years, male 1020.8
GTEX-144GO-0011-R7b-SM-5S2TT 60-69 years, male 1019.4
GTEX-YJ89-0011-R7a-SM-4V6GO 60-69 years, male 1017.0
GTEX-13FHO-0011-R7b-SM-5LZXD 60-69 years, male 995.3
GTEX-13112-0011-R7b-SM-5DUVW 50-59 years, male 989.1
GTEX-1A3MX-0011-R7a-SM-7DUEM 60-69 years, male 985.2
GTEX-12WSD-0011-R7b-SM-5PNWE 60-69 years, female 985.0
GTEX-1B8SF-0011-R7b-SM-9OSVM 60-69 years, male 984.6
GTEX-16Z82-0011-R7a-SM-7MKGJ 60-69 years, male 959.0
GTEX-13NYB-0011-R7a-SM-5MR5D 40-49 years, male 957.1
GTEX-13FXS-0011-R7a-SM-5L3FC 50-59 years, male 956.7
GTEX-13CZV-0011-R7b-SM-5LZXH 60-69 years, male 952.5
GTEX-13S7M-0011-R7a-SM-5O9DK 60-69 years, female 949.8
GTEX-ZXG5-0011-R7b-SM-57WCC 60-69 years, male 948.7
GTEX-1LVA9-0011-R7a-SM-EYYWG 50-59 years, male 940.3
GTEX-13QJC-0011-R7b-SM-5PNUM 60-69 years, female 938.3
GTEX-12WSA-0011-R7b-SM-5GU5U 60-69 years, male 935.3
GTEX-1445S-0011-R7b-SM-5PNUG 60-69 years, male 924.2
GTEX-1JMQK-0011-R7b-SM-EXUTF 60-69 years, male 923.5
GTEX-QMR6-0011-R7A-SM-32PKL 50-59 years, male 922.4
GTEX-13OW8-0011-R7a-SM-5L3FP 60-69 years, male 912.6
GTEX-11NUK-0011-R7a-SM-DO93P 50-59 years, male 912.2
GTEX-1H3NZ-0011-R7a-SM-A9SKD 60-69 years, male 906.7
GTEX-NPJ7-0011-R7a-SM-EV79B 60-69 years, female 905.0
GTEX-ZE7O-0011-R7a-SM-57WCU 50-59 years, female 898.9
GTEX-1H1DG-0011-R7b-SM-A96RR 70-79 years, male 884.6
GTEX-17F97-0011-R7b-SM-7MGVY 50-59 years, male 883.5
GTEX-ZV68-0011-R7a-SM-51MT4 50-59 years, female 882.6
GTEX-12ZZX-0011-R7b-SM-5DUVV 40-49 years, female 879.9
GTEX-14BIN-0011-R7b-SM-5S2RI 50-59 years, female 871.9
GTEX-ZF28-0011-R7a-SM-4WKF5 60-69 years, male 871.6
GTEX-17HG3-0011-R7b-SM-7EPGR 30-39 years, female 870.0
GTEX-13JUV-0011-R7b-SM-5LZZG 40-49 years, female 869.8
GTEX-1GF9V-0011-R7a-SM-CJI2R 60-69 years, male 869.0
GTEX-15DCD-0011-R7b-SM-6LPID 70-79 years, female 858.5
GTEX-1GZ2Q-0011-R7b-SM-9OSWN 40-49 years, male 855.9
GTEX-ZE9C-0011-R7a-SM-4WWCX 60-69 years, male 846.6
GTEX-1GF9W-0011-R7b-SM-9QEIF 60-69 years, male 843.5
GTEX-18464-0011-R7b-SM-731CM 50-59 years, male 835.8
GTEX-YFC4-0011-R7b-SM-4V6E2 40-49 years, female 832.4
GTEX-1EU9M-0011-R7b-SM-9OSVU 60-69 years, male 824.4
GTEX-1IOXB-0011-R7b-SM-CE6SM 50-59 years, male 819.5
GTEX-145MG-0011-R7b-SM-5P9JY 50-59 years, male 816.6
GTEX-13JVG-0011-R7b-SM-5MR3Q 60-69 years, male 816.5
GTEX-1EN7A-0011-R7b-SM-9QEHX 40-49 years, male 815.4
GTEX-14JG1-0011-R7b-SM-5YYAV 40-49 years, male 814.3
GTEX-Y8DK-0011-R7A-SM-4SOJZ 60-69 years, male 812.3
GTEX-1H23P-0011-R7b-SM-CKZP2 60-69 years, male 806.6
GTEX-1H1CY-0011-R7a-SM-CJI32 60-69 years, female 806.3
GTEX-1CB4H-0011-R7b-SM-CJI27 60-69 years, female 804.1
GTEX-132Q8-0011-R7b-SM-5N9F1 60-69 years, male 803.3
GTEX-1I1GV-0011-R7a-SM-ARU6R 60-69 years, male 800.4
GTEX-1F75B-0011-R7a-SM-ARU84 50-59 years, male 799.5
GTEX-1EH9U-0011-R7a-SM-9QEGU 60-69 years, male 797.6
GTEX-12WSE-0011-R7a-SM-5PNWF 20-29 years, male 786.6
GTEX-11DXW-0011-R7b-SM-DO119 40-49 years, male 785.8
GTEX-15G19-0011-R7b-SM-6M479 60-69 years, male 784.7
GTEX-NL3H-0011-R7a-SM-2I3G5 60-69 years, male 783.6
GTEX-1MA7X-0011-R7b-SM-EYYWS 60-69 years, male 782.3
GTEX-147GR-0011-R7a-SM-5S2RP 60-69 years, male 775.5
GTEX-11WQC-0011-R7b-SM-5BC7A 60-69 years, male 774.7
GTEX-17HII-0011-R7a-SM-79OMS 50-59 years, male 768.1
GTEX-17EVQ-0011-R7a-SM-7EWDA 70-79 years, male 762.0
GTEX-X261-0011-R7A-SM-4E3JJ 50-59 years, male 761.6
GTEX-1GMR8-0011-R7b-SM-CJI2I 50-59 years, female 751.2
GTEX-1IKOH-0011-R7b-SM-CKZPH 60-69 years, female 750.4
GTEX-1I1GS-0011-R7a-SM-CM2T6 60-69 years, male 747.3
GTEX-13OW5-0011-R7a-SM-5O9C9 60-69 years, male 743.1
GTEX-1E2YA-0011-R7a-SM-CJI1Z 50-59 years, male 739.4
GTEX-WVLH-0011-R7A-SM-3MJFB 50-59 years, male 737.0
GTEX-1J1OQ-0011-R7b-SM-ARU87 40-49 years, female 733.1
GTEX-ZVT3-0011-R7a-SM-57WCO 60-69 years, female 732.1
GTEX-1E1VI-0011-R7b-SM-9QEGR 50-59 years, male 727.0
GTEX-139TS-0011-R7a-SM-5K7X7 60-69 years, male 721.9
GTEX-13FHP-0011-R7b-SM-5LZYI 50-59 years, male 719.0
GTEX-1GZ4I-0011-R7b-SM-ARU71 50-59 years, male 717.5
GTEX-1GMRU-0011-R7b-SM-A96TJ 50-59 years, male 709.5
GTEX-1F48J-0011-R7a-SM-CJI2G 50-59 years, female 707.5
GTEX-14LZ3-0011-R7a-SM-69LQN 60-69 years, female 704.7
GTEX-1R46S-0011-R7b-SM-EXUTH 60-69 years, female 699.8
GTEX-1GN2E-0011-R7b-SM-9QEIJ 60-69 years, male 696.7
GTEX-14BMV-0011-R7b-SM-5YY9J 50-59 years, male 694.3
GTEX-1F6I4-0011-R7a-SM-CJI24 60-69 years, male 690.8
GTEX-144GL-0011-R7b-SM-5P9HX 50-59 years, male 688.7
GTEX-13PVQ-0011-R7a-SM-5L3G3 50-59 years, male 686.3
GTEX-1A8G6-0011-R7b-SM-7MXTV 60-69 years, male 684.2
GTEX-ZDXO-0011-R7a-SM-4WWCU 60-69 years, male 680.5
GTEX-NPJ8-0011-R7a-SM-2HMJV 40-49 years, male 678.5
GTEX-1F52S-0011-R7b-SM-9QEH8 60-69 years, female 671.1
GTEX-OHPN-0011-R7A-SM-2I5FI 60-69 years, female 656.2
GTEX-18465-0011-R7b-SM-7LG6V 50-59 years, male 654.0
GTEX-183WM-0011-R7b-SM-731AX 70-79 years, female 647.1
GTEX-13N2G-0011-R7a-SM-5MR42 60-69 years, male 614.1
GTEX-1H3VE-0011-R7b-SM-CE6S9 40-49 years, male 601.9
GTEX-1H4P4-0011-R7b-SM-ARU77 50-59 years, male 594.6
GTEX-1C64N-0011-R7a-SM-7IGOI 50-59 years, male 586.1
GTEX-17HHY-0011-R7a-SM-718A1 50-59 years, male 570.4
GTEX-13OVL-0011-R7a-SM-5P9GW 50-59 years, male 505.6
GTEX-13OVJ-0011-R7a-SM-5L3G1 50-59 years, female 500.6
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BASAL GANGLIA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

1607.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 1046.3
FF:10164-103B2 76 years, female 1046.3
Nucleus accumbens
Scaled Tags Per Million: 990.8
FF:10037-101F1 23-56 years, mixed 990.8
Putamen
Scaled Tags Per Million: 1607.1
FF:10176-103C5 60 years, female 1607.1
Globus pallidus
Scaled Tags Per Million: 947.4
FF:10175-103C4 60 years, female 1017.0
FF:10161-103A8 76 years, female 877.8

BASAL GANGLIA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1558.0
Pig sample Sample description nTPM
Caudate
nTPM: 1152.4
Samples: 4

Max nTPM: 1277.9
Min nTPM: 1061.3
Sample A Female 1159.6
Sample B Female 1061.3
Sample C Male 1277.9
Sample D Male 1110.7
Putamen
nTPM: 1558.0
Samples: 4

Max nTPM: 2583.4
Min nTPM: 944.0
Sample A Female 944.0
Sample B Female 1397.9
Sample C Male 2583.4
Sample D Male 1306.7
Septum
nTPM: 974.8
Samples: 4

Max nTPM: 1053.0
Min nTPM: 890.3
Sample A Female 1043.5
Sample B Female 890.3
Sample C Male 912.3
Sample D Male 1053.0
Ventral pallidum
nTPM: 952.1
Samples: 4

Max nTPM: 1111.5
Min nTPM: 768.7
Sample A Female 1039.7
Sample B Female 1111.5
Sample C Male 888.3
Sample D Male 768.7

BASAL GANGLIA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

3662.5
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 3662.5
Samples: 4

Max nTPM: 3790.5
Min nTPM: 3584.8
Sample A Male 3790.5
Sample B Male 3683.1
Sample C Female 3591.6
Sample D Female 3584.8
Septum
nTPM: 2412.1
Samples: 4

Max nTPM: 2713.7
Min nTPM: 2210.4
Sample A Male 2233.9
Sample B Male 2713.7
Sample C Female 2490.5
Sample D Female 2210.4
Ventral forebrain
nTPM: 2956.0
Samples: 4

Max nTPM: 3174.9
Min nTPM: 2764.3
Sample A Male 2950.1
Sample B Male 2764.3
Sample C Female 3174.9
Sample D Female 2934.7

BASAL GANGLIA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

21.0
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 21.0
182 Antisense, RP_Baylor_102653, Mouse strain C57BL/6J (56 days, male) 21.0
183 Antisense, RP_Baylor_102653, Mouse strain C57BL/6J (56 days, male) 19.2
Pallidum
Expression energy: 16.2
183 Antisense, RP_Baylor_102653, Mouse strain C57BL/6J (56 days, male) 16.2
182 Antisense, RP_Baylor_102653, Mouse strain C57BL/6J (56 days, male) 15.2

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