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TISSUE PRIMARY DATA VAGINA Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Vagina
Tissue proteome
Vagina
VAGINA - Expression summary
Protein expression
Vaginai

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Squamous epithelial cells: High
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:1641.1 nTPM
GTEx:1641.1 nTPM
FANTOM5:28.6 Scaled Tags Per Million

VAGINA - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA041344Antibody HPA049132Antibody CAB033319
Squamous epithelial cells HighHighMedium






VAGINA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1641.1
GTEx sample id Sample description nTPM
Vagina
Average nTPM: 1641.1
Samples: 156

Max nTPM: 4713.0
Min nTPM: 852.3
Std nTPM: 494.3
Median nTPM: 1561.8
GTEX-1AMFI-1526-SM-73KVY 50-59 years, female 4713.0
GTEX-NPJ7-2526-SM-EV79A 60-69 years, female 3320.5
GTEX-1JMQL-2326-SM-CNNPV 50-59 years, female 2951.0
GTEX-1GMR8-2526-SM-7RHI9 50-59 years, female 2922.0
GTEX-12ZZX-1926-SM-5EGKC 40-49 years, female 2608.1
GTEX-ZE7O-2426-SM-57WD7 50-59 years, female 2595.9
GTEX-183WM-2126-SM-7LG4I 70-79 years, female 2544.2
GTEX-1S5ZU-2626-SM-E9TII 20-29 years, female 2498.8
GTEX-ZVT3-2726-SM-5GU5X 60-69 years, female 2384.4
GTEX-ZYVF-0326-SM-5GIES 50-59 years, female 2382.2
GTEX-Y8LW-1426-SM-5RQJJ 50-59 years, female 2370.5
GTEX-SN8G-2626-SM-EXUQT 50-59 years, female 2344.9
GTEX-113JC-1926-SM-5N9GE 50-59 years, female 2268.4
GTEX-1A8FM-2426-SM-7IGPE 50-59 years, female 2244.8
GTEX-14DAQ-2326-SM-5S2QX 60-69 years, female 2234.6
GTEX-16NPV-2526-SM-6M483 50-59 years, female 2218.3
GTEX-1HBPM-2726-SM-9WYUA 60-69 years, female 2213.9
GTEX-15UF6-2126-SM-6M46Z 70-79 years, female 2183.1
GTEX-1EWIQ-2326-SM-7IGNF 70-79 years, female 2171.5
GTEX-11GSP-2226-SM-5HL5Q 60-69 years, female 2127.7
GTEX-ZAK1-2426-SM-EXOHM 50-59 years, female 2125.5
GTEX-X8HC-2826-SM-46MWJ 50-59 years, female 2113.3
GTEX-1LNCM-1026-SM-E9U5D 50-59 years, female 2113.1
GTEX-1F48J-2526-SM-7P8TU 50-59 years, female 2097.9
GTEX-13OVI-0926-SM-5J1MI 60-69 years, female 2087.4
GTEX-1117F-2526-SM-5GZY6 60-69 years, female 2073.0
GTEX-13QIC-1826-SM-5J1MY 60-69 years, female 2039.6
GTEX-18A7A-2826-SM-7LT8J 50-59 years, female 2016.9
GTEX-11EMC-1926-SM-5A5JU 60-69 years, female 2010.7
GTEX-15SHU-2926-SM-7KUKT 40-49 years, female 2008.8
GTEX-SE5C-1126-SM-4BRWZ 40-49 years, female 1954.4
GTEX-RWS6-1726-SM-47JXP 60-69 years, female 1953.8
GTEX-13D11-1326-SM-5IJFY 50-59 years, female 1943.6
GTEX-1LH75-1726-SM-DHXKZ 50-59 years, female 1911.7
GTEX-11TTK-2726-SM-5GU58 60-69 years, female 1884.1
GTEX-WRHU-2926-SM-4MVNQ 50-59 years, female 1882.0
GTEX-ZTPG-2226-SM-57WF9 20-29 years, female 1864.3
GTEX-13PVR-1426-SM-5S2PW 60-69 years, female 1858.3
GTEX-1HCU6-2326-SM-ACKXP 60-69 years, female 1856.8
GTEX-1GF9U-1926-SM-7P8TZ 40-49 years, female 1833.1
GTEX-OHPK-2526-SM-3MJH9 50-59 years, female 1832.7
GTEX-1GN1U-2426-SM-9KNTU 50-59 years, female 1816.8
GTEX-1HCU8-2026-SM-9YFLE 60-69 years, female 1807.8
GTEX-S4UY-1326-SM-4AD4X 40-49 years, female 1798.3
GTEX-18D9A-1026-SM-7KFRU 30-39 years, female 1797.9
GTEX-TSE9-2526-SM-4DXUS 60-69 years, female 1786.4
GTEX-WEY5-0826-SM-4LMIH 40-49 years, female 1779.5
GTEX-147F3-1526-SM-5SIAK 50-59 years, female 1770.0
GTEX-145LS-2526-SM-5TDC9 60-69 years, female 1768.0
GTEX-13U4I-2026-SM-5LU3L 40-49 years, female 1760.7
GTEX-131XG-2126-SM-5DUXG 50-59 years, female 1755.5
GTEX-15ER7-2526-SM-7KUFW 20-29 years, female 1735.3
GTEX-YFC4-2926-SM-5IFJ8 40-49 years, female 1733.2
GTEX-S7SF-1426-SM-4AT5A 20-29 years, female 1733.0
GTEX-1J8EW-2526-SM-CKZO2 60-69 years, female 1723.2
GTEX-1HBPH-2926-SM-9WPNX 40-49 years, female 1720.3
GTEX-1LVAN-1626-SM-CNPQ7 50-59 years, female 1719.5
GTEX-ZQG8-1126-SM-51MRL 60-69 years, female 1716.0
GTEX-1IE54-2626-SM-CMKFY 40-49 years, female 1715.1
GTEX-12WSD-2926-SM-5LZUH 60-69 years, female 1713.7
GTEX-15SB6-1426-SM-7KUEM 50-59 years, female 1700.1
GTEX-14BMU-1926-SM-5S2QC 20-29 years, female 1699.8
GTEX-11DXX-1726-SM-5H11T 60-69 years, female 1696.1
GTEX-QDT8-2526-SM-48TYX 30-39 years, female 1690.3
GTEX-11P81-2126-SM-5HL6N 30-39 years, female 1684.3
GTEX-1JN1M-2326-SM-ARZNG 60-69 years, female 1681.8
GTEX-14AS3-1726-SM-5RQJV 40-49 years, female 1658.1
GTEX-131YS-2426-SM-5J2OD 60-69 years, female 1655.7
GTEX-W5WG-1026-SM-4LMIF 50-59 years, female 1654.8
GTEX-ZYY3-2626-SM-5N9DH 60-69 years, female 1624.8
GTEX-14A5I-2726-SM-5SIB3 50-59 years, female 1623.3
GTEX-15DYW-2926-SM-6PANA 60-69 years, female 1616.1
GTEX-1J1OQ-1826-SM-CL53R 40-49 years, female 1612.6
GTEX-T6MO-1226-SM-4DM5S 40-49 years, female 1595.3
GTEX-XUZC-1226-SM-4BRVJ 30-39 years, female 1578.7
GTEX-S4P3-1126-SM-4AD52 50-59 years, female 1576.9
GTEX-ZC5H-2226-SM-4WAWS 40-49 years, female 1571.7
GTEX-PLZ4-2726-SM-3P61A 50-59 years, female 1569.8
GTEX-TMMY-1926-SM-4DXUU 40-49 years, female 1553.8
GTEX-1CAMS-2326-SM-793CR 40-49 years, female 1552.1
GTEX-1QP28-1426-SM-EVR4E 50-59 years, female 1547.7
GTEX-ZV6S-1326-SM-59HJA 40-49 years, female 1546.3
GTEX-OHPN-2426-SM-E9TI5 60-69 years, female 1540.4
GTEX-ZLWG-1126-SM-4WWFQ 50-59 years, female 1534.1
GTEX-1LGOU-1126-SM-D3LAI 20-29 years, female 1530.6
GTEX-17F9Y-2326-SM-7DUFP 70-79 years, female 1510.0
GTEX-WYVS-1426-SM-4ONCV 40-49 years, female 1496.1
GTEX-ZGAY-2226-SM-4YCCX 40-49 years, female 1484.5
GTEX-PWN1-2526-SM-48TDS 40-49 years, female 1477.8
GTEX-QVJO-2526-SM-CYPRA 60-69 years, female 1450.9
GTEX-UJHI-1326-SM-4IHJO 50-59 years, female 1433.8
GTEX-1F5PL-1826-SM-7P8PP 40-49 years, female 1411.9
GTEX-145ME-1426-SM-5RQJS 40-49 years, female 1411.5
GTEX-1JN76-1526-SM-CNPPF 20-29 years, female 1404.1
GTEX-Y114-1926-SM-4TT8J 50-59 years, female 1401.7
GTEX-QCQG-1226-SM-48U23 50-59 years, female 1394.1
GTEX-1GN1W-1526-SM-7P8TG 50-59 years, female 1388.1
GTEX-PWCY-1726-SM-48TD3 20-29 years, female 1387.5
GTEX-T2IS-1926-SM-4DM74 20-29 years, female 1387.4
GTEX-ZZPU-2226-SM-5EGIV 50-59 years, female 1386.0
GTEX-146FR-2426-SM-5NQAU 60-69 years, female 1373.9
GTEX-N7MT-1926-SM-3LK5N 60-69 years, female 1368.8
GTEX-ZXES-0626-SM-5E45P 30-39 years, female 1365.6
GTEX-146FH-2626-SM-5Q5E1 50-59 years, female 1360.6
GTEX-14H4A-2426-SM-664OQ 40-49 years, female 1358.7
GTEX-1R9JW-1426-SM-DTX9K 30-39 years, female 1357.0
GTEX-11XUK-1326-SM-5EQM4 40-49 years, female 1344.2
GTEX-Y3IK-2226-SM-4YCD4 50-59 years, female 1338.3
GTEX-11EM3-1826-SM-5A5KO 20-29 years, female 1338.2
GTEX-PX3G-2526-SM-48TZV 20-29 years, female 1337.9
GTEX-13N11-1526-SM-5L3FL 50-59 years, female 1328.1
GTEX-1LGRB-2126-SM-COH48 50-59 years, female 1326.4
GTEX-1IDJU-1026-SM-AHZ2U 60-69 years, female 1306.1
GTEX-13QBU-1726-SM-5IJFQ 40-49 years, female 1305.4
GTEX-1NUQO-1826-SM-E6CQU 20-29 years, female 1287.9
GTEX-17JCI-2526-SM-7DHLB 60-69 years, female 1285.4
GTEX-13PL7-2726-SM-5L3GB 60-69 years, female 1281.7
GTEX-1LVAM-1926-SM-E6CIM 50-59 years, female 1271.5
GTEX-16NGA-1626-SM-72D6M 40-49 years, female 1268.7
GTEX-1399S-2326-SM-5K7YV 30-39 years, female 1266.7
GTEX-S341-1226-SM-4AD5S 40-49 years, female 1266.7
GTEX-P78B-2226-SM-3P5ZZ 40-49 years, female 1247.3
GTEX-14JG6-0726-SM-69LQH 30-39 years, female 1243.3
GTEX-1I1GT-1226-SM-B2LVK 60-69 years, female 1241.8
GTEX-Q734-1426-SM-DTXFX 40-49 years, female 1241.4
GTEX-P4PP-2526-SM-3P61P 30-39 years, female 1241.0
GTEX-14PJM-2926-SM-69LOE 50-59 years, female 1237.8
GTEX-XUW1-0326-SM-4BOOR 50-59 years, female 1237.7
GTEX-14PKU-1326-SM-6871B 40-49 years, female 1237.2
GTEX-13W3W-2326-SM-5LU4Y 60-69 years, female 1235.8
GTEX-1399U-1526-SM-5J2N7 50-59 years, female 1233.4
GTEX-1QPFJ-1626-SM-DTX7X 30-39 years, female 1231.3
GTEX-1MCYP-1326-SM-EV7AD 20-29 years, female 1220.7
GTEX-11I78-2026-SM-5987C 50-59 years, female 1214.1
GTEX-XV7Q-1626-SM-4BRWC 40-49 years, female 1213.2
GTEX-1HCUA-1026-SM-A9SMI 50-59 years, female 1207.5
GTEX-1QCLZ-2226-SM-DTX7R 60-69 years, female 1203.4
GTEX-U3ZN-0926-SM-4DXTU 30-39 years, female 1200.3
GTEX-ZVT2-0626-SM-5GICR 50-59 years, female 1198.0
GTEX-X15G-1926-SM-4PQZQ 50-59 years, female 1193.2
GTEX-1C475-0526-SM-793AC 40-49 years, female 1191.6
GTEX-YJ8O-1226-SM-5P9JE 40-49 years, female 1165.3
GTEX-1PIEJ-1926-SM-EVYB7 20-29 years, female 1163.5
GTEX-14PJ6-1626-SM-6872D 60-69 years, female 1161.0
GTEX-TML8-1126-SM-4DXSS 40-49 years, female 1123.5
GTEX-OHPL-2526-SM-3MJGT 60-69 years, female 1117.8
GTEX-1I4MK-1726-SM-ARL7O 50-59 years, female 1106.8
GTEX-12WSJ-1326-SM-5GCOB 40-49 years, female 1105.2
GTEX-ZP4G-0826-SM-4WWF3 20-29 years, female 1084.7
GTEX-1HFI7-1126-SM-A96S5 50-59 years, female 1081.6
GTEX-1ICG6-1626-SM-ARL81 70-79 years, female 1058.9
GTEX-RU1J-1426-SM-46MUV 20-29 years, female 1056.1
GTEX-14PN3-1626-SM-6AJAV 60-69 years, female 1024.7
GTEX-1MCC2-1126-SM-EVYD6 30-39 years, female 956.4
GTEX-15SDE-1726-SM-6LPJS 50-59 years, female 913.6
GTEX-11VI4-0726-SM-5GU5B 40-49 years, female 852.3
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VAGINA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

28.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Vagina
Scaled Tags Per Million: 28.6
FF:10204-103F6 68 years, female 28.6

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