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BRAIN MEDULLA OBLONGATA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Medulla oblongata
MEDULLA OBLONGATA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
HPA Brain:366.5 nTPM
FANTOM5:109.6 Scaled Tags Per Million
Pig:246.9 nTPM

MEDULLA OBLONGATA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

366.5
Sample id Sample description nTPM
Area postrema
nTPM: 235.4
2799 Male, age 61, both hemispheres 386.7
2306 Male, age 80, both hemispheres 212.5
2054 Male, age 76, both hemispheres 106.9
Dorsal medullary reticular nucleus
nTPM: 238.5
2373 Male, age 61, both hemispheres 277.4
2088 Male, age 76, both hemispheres 246.4
2040 Female, age 85, both hemispheres 191.9
Dorsal motor vagal complex
nTPM: 229.7
2797 Male, age 61, both hemispheres 646.2
2807 Female, age 85, both hemispheres 232.7
2643 Male, age 74, both hemispheres 228.6
2185 Male, age 76, both hemispheres 190.8
2000 Male, age 74, unknown 143.3
2133 Female, age 91, both hemispheres 138.2
2844 Male, age 55, unknown 132.8
2813 Female, age 72, unknown 124.9
Gigantocellular reticular nuclei, medullary
nTPM: 224.0
2314 Male, age 61, both hemispheres 373.4
2387 Female, age 91, both hemispheres 296.4
2310 Male, age 80, both hemispheres 225.2
1876 Female, age 85, both hemispheres 199.3
2022 Male, age 76, right hemisphere 136.0
2462 Male, age 74, both hemispheres 113.8
Gigantocellular reticular nuclei, pars
nTPM: 212.4
2336 Male, age 61, both hemispheres 250.4
2706 Male, age 80, both hemispheres 231.1
2330 Male, age 80, both hemispheres 230.4
2084 Female, age 85, both hemispheres 193.7
2168 Male, age 76, both hemispheres 156.5
Inferior olive
nTPM: 210.3
2628 Female, age 91, both hemispheres 290.7
2379 Male, age 80, both hemispheres 233.6
2178 Male, age 61, both hemispheres 218.1
2085 Female, age 85, both hemispheres 178.0
2563 Male, age 74, both hemispheres 131.1
Lateral medullary reticular nucleus
nTPM: 225.0
2852 Male, age 80, both hemispheres 262.4
2374 Male, age 61, both hemispheres 256.2
2190 Female, age 85, both hemispheres 228.6
2804 Female, age 91, both hemispheres 220.0
2305 Male, age 74, both hemispheres 212.7
2044 Male, age 76, both hemispheres 169.8
Medial olivary nucleus
nTPM: 284.4
1962 Male, age 76, both hemispheres 444.8
1943 Male, age 61, both hemispheres 258.8
2851 Male, age 80, both hemispheres 220.2
2138 Female, age 91, both hemispheres 213.9
Medial vestibular nucleus
nTPM: 221.8
2624 Male, age 61, both hemispheres 308.0
2803 Female, age 91, both hemispheres 287.1
2801 Male, age 74, both hemispheres 257.6
2093 Male, age 80, both hemispheres 235.0
2743 Female, age 85, both hemispheres 154.0
2134 Male, age 76, both hemispheres 89.3
Motor hypoglossal nucleus
nTPM: 231.4
2182 Male, age 80, both hemispheres 337.3
2132 Female, age 85, both hemispheres 273.8
2125 Female, age 91, both hemispheres 260.3
2461 Male, age 61, both hemispheres 210.5
2277 Male, age 76, both hemispheres 75.4
Nucleus ambiguus
nTPM: 213.2
2071 Male, age 76, both hemispheres 289.5
2096 Female, age 85, both hemispheres 137.0
Nucleus cuneatus
nTPM: 319.9
2805 Female, age 91, both hemispheres 412.1
2380 Male, age 80, both hemispheres 394.4
2381 Male, age 80, both hemispheres 366.1
2808 Female, age 85, both hemispheres 336.6
2376 Male, age 61, both hemispheres 325.3
2100 Male, age 76, both hemispheres 296.3
2564 Male, age 74, both hemispheres 284.4
2562 Male, age 61, both hemispheres 280.1
2131 Male, age 76, both hemispheres 184.2
Nucleus gracilis
nTPM: 301.9
2382 Male, age 80, both hemispheres 383.4
2299 Female, age 85, both hemispheres 262.2
2627 Male, age 74, both hemispheres 260.1
Nucleus raphe obscurus
nTPM: 366.5
2142 Male, age 76, midline 407.8
2845 Female, age 85, midline 359.2
2800 Male, age 61, midline 332.6
Nucleus raphe pallidus
nTPM: 288.6
2145 Male, age 76, midline 488.7
2183 Male, age 80, midline 222.9
1924 Male, age 61, midline 154.2
Nucleus tractus solitarii
nTPM: 101.3
2191 Female, age 85, both hemispheres 130.5
2307 Male, age 80, both hemispheres 102.6
2656 Male, age 76, both hemispheres 91.2
2144 Female, age 91, right hemisphere 80.9
Parvicellular reticular nuclei
nTPM: 260.9
2095 Male, age 76, both hemispheres 380.9
2119 Male, age 80, both hemispheres 227.1
2558 Male, age 74, both hemispheres 174.6
Parvicellular reticular nuclei, medullary
nTPM: 171.8
2189 Female, age 91, both hemispheres 190.2
2181 Male, age 80, left hemisphere 186.2
2091 Female, age 85, both hemispheres 138.9
Peritrigeminal nucleus
nTPM: 204.7
2136 Male, age 76, both hemispheres 230.9
2179 Male, age 61, both hemispheres 205.1
2067 Female, age 85, both hemispheres 178.0
Prepositus hypoglossal nucleus
nTPM: 218.0
2855 Female, age 85, right hemisphere 328.0
2086 Male, age 80, both hemispheres 108.0
Spinal trigeminal nucleus, caudal
nTPM: 218.2
2308 Male, age 80, both hemispheres 259.7
2312 Male, age 61, both hemispheres 229.7
2447 Male, age 76, both hemispheres 224.0
2642 Male, age 74, both hemispheres 197.9
2390 Female, age 91, both hemispheres 179.7
Spinal trigeminal nucleus, interpolar
nTPM: 177.6
2389 Female, age 91, both hemispheres 203.4
2033 Male, age 80, both hemispheres 203.1
2625 Male, age 61, both hemispheres 177.8
2386 Female, age 85, both hemispheres 171.3
2066 Male, age 76, right hemisphere 132.1
Spinal vestibular nucleus
nTPM: 262.4
2384 Male, age 74, both hemispheres 370.3
2806 Female, age 85, both hemispheres 279.3
2796 Male, age 61, both hemispheres 264.9
2748 Male, age 76, both hemispheres 251.5
2780 Male, age 80, both hemispheres 209.2
2186 Female, age 91, both hemispheres 199.2
Superior vestibular nucleus
nTPM: 168.7
2015 Male, age 80, both hemispheres 223.4
2383 Male, age 74, both hemispheres 151.7
2061 Male, age 76, both hemispheres 130.9
Ventral medullary reticular nucleus
nTPM: 244.9
2372 Male, age 61, both hemispheres 279.2
2060 Male, age 76, both hemispheres 210.7
Ventrolateral medulla, A1-C1 cell groups
nTPM: 204.2
2118 Male, age 80, both hemispheres 261.6
2302 Female, age 91, both hemispheres 202.7
1986 Male, age 76, both hemispheres 200.3
2180 Male, age 61, both hemispheres 188.9
2741 Female, age 85, both hemispheres 167.5

MEDULLA OBLONGATA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

109.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Medulla oblongata
Scaled Tags Per Million: 109.6
FF:10038-101F2 18-64 years, mixed 143.9
FF:10174-103C3 60 years, female 92.6
FF:10155-103A2 76 years, female 92.4

MEDULLA OBLONGATA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

246.9
Pig sample Sample description nTPM
Medulla oblongata
nTPM: 246.9
Samples: 4

Max nTPM: 288.8
Min nTPM: 172.0
Sample A Female 256.6
Sample B Female 172.0
Sample C Male 270.2
Sample D Male 288.8

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