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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:377.9 nTPM
HPA Brain:307.9 nTPM
GTEx:377.9 nTPM
FANTOM5:151.9 Scaled Tags Per Million
Pig:438.0 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

307.9
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 194.0
2565 Male, age 75, midline 289.6
2816 Male, age 47, midline 216.0
2048 Male, age 55, midline 169.7
1981 Female, age 72, midline 151.1
2194 Female, age 79, both hemispheres 143.5
Cervical spinal cord, dorsal horn
nTPM: 160.8
2296 Male, age 66, both hemispheres 271.6
2173 Female, age 72, unknown 203.9
2069 Male, age 47, both hemispheres 157.7
1877 Male, age 55, unknown 140.2
2297 Male, age 75, both hemispheres 96.8
2721 Male, age 90, both hemispheres 94.8
Cervical spinal cord, ventral horn
nTPM: 307.9
2480 Male, age 75, both hemispheres 618.0
2809 Male, age 90, both hemispheres 368.2
2295 Male, age 66, both hemispheres 285.3
2820 Female, age 79, both hemispheres 227.7
2068 Male, age 55, unknown 189.8
2098 Female, age 72, unknown 158.7

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

377.9
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 377.9
Samples: 159

Max nTPM: 1091.9
Min nTPM: 75.3
Std nTPM: 189.7
Median nTPM: 341.1
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 1091.9
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 973.8
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 962.6
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 935.9
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 862.5
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 796.8
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 754.7
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 732.2
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 728.1
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 707.4
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 664.4
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 657.5
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 638.6
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 629.2
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 627.4
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 623.7
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 619.7
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 619.0
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 610.7
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 607.4
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 591.8
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 591.1
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 588.6
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 581.3
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 576.9
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 571.1
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 563.9
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 553.9
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 553.3
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 547.2
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 545.5
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 543.5
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 533.9
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 532.9
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 514.8
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 511.9
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 507.0
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 496.8
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 491.0
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 488.0
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 478.2
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 471.8
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 471.2
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 461.6
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 454.4
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 450.1
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 441.8
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 441.0
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 440.5
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 435.6
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 431.4
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 428.5
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 426.0
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 425.1
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 423.0
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 422.3
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 415.5
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 413.7
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 407.5
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 405.3
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 401.3
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 398.5
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 394.7
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 392.0
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 383.5
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 382.4
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 379.9
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 379.4
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 377.2
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 374.9
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 371.6
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 364.2
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 363.9
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 363.6
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 360.8
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 360.1
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 351.0
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 345.6
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 344.4
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 341.1
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 340.2
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 336.6
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 330.8
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 328.4
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 328.1
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 326.9
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 325.9
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 313.2
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 303.7
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 302.0
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 300.7
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 297.4
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 288.7
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 287.6
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 286.5
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 285.7
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 284.0
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 280.0
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 269.7
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 267.8
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 266.3
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 262.7
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 259.1
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 258.6
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 258.0
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 256.5
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 255.2
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 253.2
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 252.9
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 250.2
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 249.7
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 247.8
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 242.7
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 242.0
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 240.7
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 240.3
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 239.5
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 233.5
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 230.6
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 230.0
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 228.7
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 228.5
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 226.8
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 223.9
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 218.6
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 217.7
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 215.7
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 212.8
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 212.6
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 209.9
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 209.7
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 209.0
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 208.7
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 204.0
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 203.7
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 201.2
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 200.9
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 199.7
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 198.6
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 197.0
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 187.4
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 184.0
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 182.2
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 178.5
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 177.8
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 177.0
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 176.0
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 171.6
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 171.3
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 165.5
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 164.7
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 159.8
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 147.2
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 143.1
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 140.5
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 116.3
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 97.2
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 84.6
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 75.3
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

151.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 151.9
FF:10181-103D1 60 years, female 159.1
FF:10159-103A6 76 years, female 144.7

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

438.0
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 334.4
Samples: 4

Max nTPM: 352.4
Min nTPM: 317.8
Sample A Female 337.1
Sample B Female 330.4
Sample C Male 317.8
Sample D Male 352.4
Ventral spinal cord
nTPM: 438.1
Samples: 4

Max nTPM: 620.4
Min nTPM: 330.6
Sample A Female 431.7
Sample B Female 369.5
Sample C Male 330.6
Sample D Male 620.4

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