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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:148.2 nTPM
HPA Brain:95.8 nTPM
GTEx:148.2 nTPM
FANTOM5:142.7 Scaled Tags Per Million
Pig:71.3 nTPM
Mouse:148.8 nTPM
Allen mouse:10.4 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

95.8
Sample id Sample description nTPM
Amygdala
nTPM: 95.8
2814 Male, age 76, right hemisphere 116.3
2695 Female, age 67, right hemisphere 107.8
1987 Female, age 91, left hemisphere 90.3
2514 Male, age 75, right hemisphere 88.9
2517 Female, age 94, left hemisphere 76.0
Basal amygdala
nTPM: 74.5
2609 Male, age 75, right hemisphere 92.8
1955 Male, age 76, both hemispheres 84.9
2110 Male, age 80, left hemisphere 78.6
2243 Female, age 91, right hemisphere 74.1
2685 Female, age 94, left hemisphere 59.6
2827 Female, age 67, right hemisphere 56.9
Central amygdala
nTPM: 90.6
1905 Male, age 76, both hemispheres 102.6
2826 Female, age 94, left hemisphere 102.0
2515 Male, age 75, right hemisphere 97.6
2239 Male, age 80, left hemisphere 77.1
2701 Female, age 91, right hemisphere 73.5
Corticomedial amygdala
nTPM: 69.9
2428 Male, age 75, right hemisphere 87.7
2829 Male, age 80, left hemisphere 86.5
2240 Male, age 76, both hemispheres 76.7
2242 Female, age 91, right hemisphere 73.6
2535 Female, age 67, right hemisphere 50.8
2429 Female, age 94, left hemisphere 44.2
Lateral amygdala
nTPM: 77.7
1883 Male, age 76, both hemispheres 104.6
2516 Male, age 75, right hemisphere 91.8
2534 Female, age 94, left hemisphere 82.2
2830 Female, age 67, right hemisphere 66.4
2256 Male, age 80, left hemisphere 63.8
2255 Female, age 91, right hemisphere 57.2

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

148.2
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 148.2
Samples: 152

Max nTPM: 828.6
Min nTPM: 69.9
Std nTPM: 114.1
Median nTPM: 113.3
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 828.6
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 758.7
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 566.4
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 537.9
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 529.3
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 511.1
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 417.1
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 386.4
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 369.6
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 356.6
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 343.8
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 282.7
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 240.1
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 228.0
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 227.4
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 219.3
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 216.4
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 194.5
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 179.6
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 178.9
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 177.6
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 177.0
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 169.3
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 158.0
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 157.6
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 157.0
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 156.4
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 151.5
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 151.0
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 150.3
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 150.0
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 149.2
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 149.0
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 145.8
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 145.3
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 144.8
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 143.1
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 141.8
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 141.4
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 140.8
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 140.4
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 137.8
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 135.4
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 135.2
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 133.5
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 132.0
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 130.9
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 130.9
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 130.7
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 130.4
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 130.4
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 127.9
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 127.5
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 126.7
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 126.6
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 126.2
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 125.6
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 125.4
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 124.6
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 124.5
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 123.1
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 122.3
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 121.3
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 119.6
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 119.6
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 119.4
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 119.3
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 119.1
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 118.0
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 117.6
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 117.0
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 115.5
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 115.4
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 115.3
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 114.1
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 113.4
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 113.2
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 112.4
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 111.7
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 110.4
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 110.3
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 110.0
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 109.6
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 109.3
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 109.0
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 108.6
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 108.5
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 108.4
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 108.3
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 108.2
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 107.6
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 107.2
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 107.1
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 107.0
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 106.3
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 105.6
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 105.6
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 105.3
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 105.1
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 104.6
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 104.4
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 103.4
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 102.6
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 102.3
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 102.0
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 101.4
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 101.2
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 100.9
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 100.7
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 100.1
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 100.0
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 99.6
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 99.2
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 99.1
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 98.9
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 98.8
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 97.9
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 97.9
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 97.7
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 96.3
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 95.4
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 94.8
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 94.7
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 94.3
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 93.4
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 93.3
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 93.2
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 93.1
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 93.1
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 91.2
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 89.4
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 89.3
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 89.1
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 88.5
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 88.2
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 88.1
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 88.1
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 87.4
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 87.0
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 85.7
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 85.7
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 85.6
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 85.4
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 84.8
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 83.1
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 82.8
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 82.4
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 82.0
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 79.5
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 77.5
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 77.0
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 69.9
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

142.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 142.7
FF:10151-102I7 76 years, female 142.7

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

71.3
Pig sample Sample description nTPM
Amygdala
nTPM: 71.3
Samples: 4

Max nTPM: 84.6
Min nTPM: 59.4
Sample A Female 84.6
Sample B Female 73.2
Sample C Male 59.4
Sample D Male 68.1

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

148.8
Mouse sample Sample description nTPM
Amygdala
nTPM: 148.8
Samples: 4

Max nTPM: 162.3
Min nTPM: 138.3
Sample A Male 162.3
Sample B Male 144.5
Sample C Female 138.3
Sample D Female 150.0

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

10.4
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 10.4
69169385 Antisense, RP_050321_03_D12, Mouse strain C57BL/6J (56 days, male) 10.4

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