HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Low
Neuronal cells: Low
RNA expressioni
Consensus:125.7 nTPM
HPA Brain:85.5 nTPM
GTEx:125.7 nTPM
FANTOM5:134.1 Scaled Tags Per Million
Pig:83.4 nTPM
Mouse:166.3 nTPM
Allen mouse:10.6 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA001523Antibody CAB002775Antibody CAB072816
Glial cells MediumLowMedium
Neuronal cells MediumLowHigh







HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max subtype nTPMi 85.5
Sample id Sample description nTPM
Hippocampus
nTPM: 82.7
1898 Male, age 80, left hemisphere 106.5
1855 Male, age 76, left hemisphere 91.3
2529 Female, age 94, left hemisphere 83.9
1911 Female, age 85, right hemisphere 72.8
2621 Female, age 67, right hemisphere 72.1
2148 Female, age 91, left hemisphere 69.4
Dentate gyrus
nTPM: 67.7
1927 Female, age 91, both hemispheres 74.9
2246 Female, age 85, both hemispheres 74.9
2530 Female, age 94, left hemisphere 73.7
2528 Male, age 74, both hemispheres 69.4
2010 Male, age 76, both hemispheres 62.4
2531 Female, age 67, both hemispheres 51.2
Entorhinal gyrus
nTPM: 68.4
2117 Female, age 91, right hemisphere 80.4
1938 Female, age 85, left hemisphere 80.1
1787 Male, age 76, left hemisphere 73.4
2686 Male, age 75, right hemisphere 70.0
2764 Male, age 80, right hemisphere 63.4
2613 Female, age 94, left hemisphere 42.8
Hippocampus, CA1
nTPM: 85.5
2749 Male, age 80, left hemisphere 117.1
1873 Female, age 85, both hemispheres 95.0
2527 Male, age 74, both hemispheres 90.9
2082 Female, age 91, right hemisphere 71.9
2045 Male, age 76, both hemispheres 52.8
Hippocampus, CA2
nTPM: 77.0
2249 Male, age 74, both hemispheres 98.5
1963 Male, age 80, left hemisphere 90.4
1940 Female, age 85, left hemisphere 73.2
2113 Female, age 91, right hemisphere 72.5
1892 Male, age 76, both hemispheres 68.8
2437 Female, age 94, left hemisphere 58.7
Hippocampus, CA3
nTPM: 77.2
2436 Male, age 74, both hemispheres 109.0
2137 Male, age 80, left hemisphere 89.6
1891 Female, age 85, both hemispheres 74.5
1867 Male, age 76, both hemispheres 69.9
2620 Female, age 94, left hemisphere 65.2
2861 Female, age 67, both hemispheres 55.3
Parahippocampal cortex
nTPM: 66.8
2250 Female, age 67, right hemisphere 79.0
1933 Female, age 85, both hemispheres 78.5
2245 Female, age 91, both hemispheres 77.4
1850 Male, age 80, both hemispheres 75.9
1990 Female, age 91, right hemisphere 69.9
2692 Male, age 74, both hemispheres 68.8
2622 Female, age 67, right hemisphere 59.5
2532 Female, age 72, left hemisphere 59.1
2018 Male, age 76, both hemispheres 57.3
2693 Female, age 94, both hemispheres 42.9
Perirhinal gyrus
nTPM: 62.8
1847 Female, age 91, left hemisphere 77.8
1841 Female, age 85, right hemisphere 74.5
1794 Male, age 80, right hemisphere 61.4
2521 Female, age 94, right hemisphere 50.6
2848 Male, age 76, right hemisphere 49.9
Subiculum
nTPM: 72.9
1901 Male, age 80, both hemispheres 91.6
1977 Female, age 85, both hemispheres 77.2
2042 Male, age 76, both hemispheres 74.4
2619 Male, age 74, both hemispheres 73.8
2729 Female, age 91, right hemisphere 64.0
2438 Female, age 94, left hemisphere 56.5

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Max subtype nTPMi 125.7
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 125.7
Samples: 197

Max nTPM: 888.6
Min nTPM: 61.0
Std nTPM: 83.2
Median nTPM: 104.2
GTEX-13NZ8-0011-R1b-SM-5KM3V 60-69 years, female 888.6
GTEX-1A32A-0011-R1a-SM-7P8SQ 50-59 years, female 512.8
GTEX-13PDP-0011-R1a-SM-5PNX5 60-69 years, male 479.3
GTEX-13OVJ-0011-R1b-SM-5L3I6 50-59 years, female 438.2
GTEX-1B996-0011-R1b-SM-7P8PO 60-69 years, male 346.5
GTEX-1CB4J-0011-R1a-SM-9WG64 60-69 years, male 342.1
GTEX-13N1W-0011-R1b-SM-5MR4T 70-79 years, male 290.5
GTEX-12WSH-0011-R1a-SM-5GU5V 50-59 years, male 289.9
GTEX-13NYS-0011-R1b-SM-5MR55 60-69 years, male 257.6
GTEX-1HSMO-0011-R1a-SM-CM2SV 60-69 years, male 255.6
GTEX-TSE9-0011-R1A-SM-3DB7E 60-69 years, female 244.8
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 134.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 134.1
FF:10153-102I9 76 years, female 167.5
FF:10169-103B7 60 years, female 100.7

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Max subtype nTPMi 83.4
Pig sample Sample description nTPM
Subiculum
nTPM: 83.1
Samples: 4

Max nTPM: 98.4
Min nTPM: 75.4
Sample A Female 98.4
Sample B Female 80.4
Sample C Male 75.4
Sample D Male 78.2
Dorsal hippocampus
nTPM: 83.5
Samples: 4

Max nTPM: 99.0
Min nTPM: 68.2
Sample A Female 99.0
Sample B Female 77.8
Sample C Male 88.8
Sample D Male 68.2
Entorhinal cortex
nTPM: 73.6
Samples: 4

Max nTPM: 85.9
Min nTPM: 61.5
Sample A Female 73.2
Sample B Female 85.9
Sample C Male 73.9
Sample D Male 61.5
Ventral hippocampus
nTPM: 75.6
Samples: 4

Max nTPM: 79.4
Min nTPM: 68.8
Sample A Female 79.3
Sample B Female 68.8
Sample C Male 75.0
Sample D Male 79.4

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Max subtype nTPMi 166.3
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 162.4
Samples: 4

Max nTPM: 187.8
Min nTPM: 147.3
Sample A Male 147.3
Sample B Male 152.7
Sample C Female 161.8
Sample D Female 187.8
Hippocampal formation
nTPM: 166.3
Samples: 4

Max nTPM: 178.9
Min nTPM: 157.6
Sample A Male 157.6
Sample B Male 167.4
Sample C Female 178.9
Sample D Female 161.2

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max subtype Expression energyi 10.6
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 10.6
69169385 Antisense, RP_050321_03_D12, Mouse strain C57BL/6J (56 days, male) 10.6

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