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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:1668.4 nTPM
HPA Brain:488.0 nTPM
GTEx:1668.4 nTPM
FANTOM5:32.3 Scaled Tags Per Million
Pig:183.7 nTPM
Mouse:846.7 nTPM
Allen mouse:5.2 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

488.0
Sample id Sample description nTPM
Amygdala
nTPM: 488.0
2695 Female, age 67, right hemisphere 630.5
2814 Male, age 76, right hemisphere 484.1
2514 Male, age 75, right hemisphere 457.2
2517 Female, age 94, left hemisphere 446.0
1987 Female, age 91, left hemisphere 422.2
Basal amygdala
nTPM: 405.2
2827 Female, age 67, right hemisphere 508.2
2685 Female, age 94, left hemisphere 421.8
2609 Male, age 75, right hemisphere 410.0
2110 Male, age 80, left hemisphere 402.8
1955 Male, age 76, both hemispheres 346.8
2243 Female, age 91, right hemisphere 341.6
Central amygdala
nTPM: 440.0
2826 Female, age 94, left hemisphere 667.6
2515 Male, age 75, right hemisphere 436.7
1905 Male, age 76, both hemispheres 377.5
2701 Female, age 91, right hemisphere 360.2
2239 Male, age 80, left hemisphere 358.0
Corticomedial amygdala
nTPM: 378.7
2429 Female, age 94, left hemisphere 406.4
2428 Male, age 75, right hemisphere 404.2
2829 Male, age 80, left hemisphere 388.3
2535 Female, age 67, right hemisphere 386.3
2240 Male, age 76, both hemispheres 372.5
2242 Female, age 91, right hemisphere 314.4
Lateral amygdala
nTPM: 459.3
2830 Female, age 67, right hemisphere 654.4
2516 Male, age 75, right hemisphere 557.6
2534 Female, age 94, left hemisphere 481.4
2256 Male, age 80, left hemisphere 399.6
1883 Male, age 76, both hemispheres 331.6
2255 Female, age 91, right hemisphere 331.0

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1668.4
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 1668.4
Samples: 152

Max nTPM: 5519.5
Min nTPM: 802.3
Std nTPM: 719.3
Median nTPM: 1516.6
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 5519.5
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 4858.9
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 4097.6
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 4003.9
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 3676.6
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 3224.4
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 3149.8
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 3011.4
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 2941.3
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 2848.6
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 2737.1
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 2610.3
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 2575.1
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 2501.5
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 2431.1
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 2416.7
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 2382.4
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 2333.3
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 2317.9
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 2290.7
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 2287.2
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 2236.9
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 2151.5
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 2151.3
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 2141.7
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 2109.0
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 2070.9
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 2034.3
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 2010.9
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 2000.8
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 1986.0
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 1965.3
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 1956.9
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 1949.7
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 1940.7
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 1940.6
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 1931.0
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 1929.2
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 1902.0
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 1884.3
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 1878.2
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 1871.5
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 1865.4
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 1855.9
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 1845.4
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 1811.6
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 1790.9
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 1772.7
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 1753.9
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 1751.3
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 1727.0
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 1699.2
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 1684.9
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 1680.2
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 1635.9
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 1630.2
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 1617.9
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 1616.0
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 1594.9
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 1594.8
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 1592.6
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 1592.5
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 1591.4
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 1586.0
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 1580.0
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 1579.8
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 1565.5
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 1561.9
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 1551.5
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 1550.7
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 1538.6
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 1535.3
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 1533.8
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 1531.2
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 1531.0
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 1516.6
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 1516.6
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 1515.8
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 1490.1
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 1480.5
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 1459.8
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 1459.2
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 1458.8
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 1454.4
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 1446.0
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 1433.6
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 1423.4
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 1410.2
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 1402.2
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 1397.5
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 1395.1
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 1393.3
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 1388.5
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 1383.3
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 1381.1
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 1376.3
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 1367.0
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 1349.8
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 1340.8
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 1336.6
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 1335.7
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 1316.1
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 1288.1
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 1268.6
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 1264.7
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 1261.9
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 1245.3
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 1227.1
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 1226.1
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 1224.3
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 1216.6
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 1211.4
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 1209.8
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 1207.9
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 1201.8
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 1197.4
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 1192.0
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 1191.6
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 1187.5
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 1181.9
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 1173.0
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 1157.9
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 1155.4
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 1151.1
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 1148.2
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 1141.4
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 1136.5
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 1121.5
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 1114.7
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 1113.7
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 1113.1
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 1099.4
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 1074.8
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 1062.2
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 1058.5
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 1043.0
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 1036.2
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 1015.9
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 1014.0
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 981.4
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 974.5
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 962.4
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 958.0
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 932.5
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 931.5
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 912.2
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 894.5
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 894.1
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 875.4
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 870.0
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 841.0
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 802.3
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

32.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 32.3
FF:10151-102I7 76 years, female 32.3

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

183.7
Pig sample Sample description nTPM
Amygdala
nTPM: 183.7
Samples: 4

Max nTPM: 219.8
Min nTPM: 112.3
Sample A Female 219.8
Sample B Female 203.9
Sample C Male 198.7
Sample D Male 112.3

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

846.7
Mouse sample Sample description nTPM
Amygdala
nTPM: 846.7
Samples: 4

Max nTPM: 920.5
Min nTPM: 771.9
Sample A Male 771.9
Sample B Male 920.5
Sample C Female 865.5
Sample D Female 828.9

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

5.2
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 5.2
75934920 Antisense, RP_060530_01_E12, Mouse strain C57BL/6J (56 days, male) 9.7
69012729 Antisense, RP_050309_01_D03, Mouse strain C57BL/6J (56 days, male) 0.7

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