HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Low
Neuronal cells: Low
Mouse brain, Intensity
Hippocampal formationi 		39.291
RNA expressioni
Consensus:28.8 nTPM
HPA Brain:53.4 nTPM
GTEx:28.8 nTPM
FANTOM5:45.2 Scaled Tags Per Million
Pig:21.6 nTPM
Mouse:50.8 nTPM
Allen mouse:2.4 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA036900Antibody HPA050139
Glial cells LowMedium
Neuronal cells MediumNot detected





HIPPOCAMPAL FORMATION - Mouse brain profilei , antibody HPA036900
Hippocampal formation mean intensity 39.291
intensityi
FRONT BACK
Polymorph layer of the dentate gyrus 33.376
Molecular layer of the dentate gyrus 31.829
Granular dentate gyrus 35.622
CA1 - oriens layer 30.870
CA1 - pyramidal layer 34.203
CA1 - radiatum layer 30.787
CA2 - oriens layer 30.424
CA2 - pyramidal layer 33.597
CA2 - radiatum layer 29.507
CA3 - oriens layer 34.504
CA3 - pyramidal layer 39.291
CA3 - radiatum layer 32.668
Stratum lucidum 36.276
Lacunosum moleculare 33.196
Subiculum 30.508

HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max subtype nTPMi 53.4
Sample id Sample description nTPM
Hippocampus
nTPM: 49.9
1911 Female, age 85, right hemisphere 59.7
2529 Female, age 94, left hemisphere 54.1
2148 Female, age 91, left hemisphere 51.6
2621 Female, age 67, right hemisphere 47.5
1898 Male, age 80, left hemisphere 44.3
1855 Male, age 76, left hemisphere 41.9
Dentate gyrus
nTPM: 39.3
2246 Female, age 85, both hemispheres 52.3
2528 Male, age 74, both hemispheres 50.4
1927 Female, age 91, both hemispheres 42.4
2530 Female, age 94, left hemisphere 31.7
2010 Male, age 76, both hemispheres 30.8
2531 Female, age 67, both hemispheres 28.2
Entorhinal gyrus
nTPM: 51.3
2117 Female, age 91, right hemisphere 60.8
1938 Female, age 85, left hemisphere 60.7
2686 Male, age 75, right hemisphere 58.6
1787 Male, age 76, left hemisphere 44.5
2764 Male, age 80, right hemisphere 43.0
2613 Female, age 94, left hemisphere 40.0
Hippocampus, CA1
nTPM: 47.7
2527 Male, age 74, both hemispheres 67.8
2082 Female, age 91, right hemisphere 51.4
2749 Male, age 80, left hemisphere 47.0
1873 Female, age 85, both hemispheres 44.5
2045 Male, age 76, both hemispheres 27.9
Hippocampus, CA2
nTPM: 47.0
2249 Male, age 74, both hemispheres 59.2
1940 Female, age 85, left hemisphere 56.9
2113 Female, age 91, right hemisphere 56.3
1963 Male, age 80, left hemisphere 43.4
2437 Female, age 94, left hemisphere 37.3
1892 Male, age 76, both hemispheres 29.2
Hippocampus, CA3
nTPM: 43.9
2436 Male, age 74, both hemispheres 56.6
2137 Male, age 80, left hemisphere 51.2
1891 Female, age 85, both hemispheres 49.3
2861 Female, age 67, both hemispheres 38.6
1867 Male, age 76, both hemispheres 36.4
2620 Female, age 94, left hemisphere 31.2
Parahippocampal cortex
nTPM: 53.4
2692 Male, age 74, both hemispheres 78.9
2622 Female, age 67, right hemisphere 66.1
1933 Female, age 85, both hemispheres 59.7
2250 Female, age 67, right hemisphere 59.5
2245 Female, age 91, both hemispheres 50.4
2693 Female, age 94, both hemispheres 49.4
1850 Male, age 80, both hemispheres 48.8
1990 Female, age 91, right hemisphere 45.9
2532 Female, age 72, left hemisphere 40.1
2018 Male, age 76, both hemispheres 34.9
Perirhinal gyrus
nTPM: 45.6
1794 Male, age 80, right hemisphere 51.6
1841 Female, age 85, right hemisphere 48.0
1847 Female, age 91, left hemisphere 47.6
2521 Female, age 94, right hemisphere 45.7
2848 Male, age 76, right hemisphere 35.3
Subiculum
nTPM: 49.5
2619 Male, age 74, both hemispheres 75.0
2729 Female, age 91, right hemisphere 52.8
1901 Male, age 80, both hemispheres 45.9
1977 Female, age 85, both hemispheres 43.8
2438 Female, age 94, left hemisphere 43.6
2042 Male, age 76, both hemispheres 36.1

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Max subtype nTPMi 28.8
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 28.8
Samples: 197

Max nTPM: 116.4
Min nTPM: 5.1
Std nTPM: 18.1
Median nTPM: 24.0
GTEX-13NYS-0011-R1b-SM-5MR55 60-69 years, male 116.4
GTEX-P44G-0011-R1A-SM-2I3FE 30-39 years, male 110.5
GTEX-14PQA-0011-R1b-SM-6EU1G 50-59 years, female 80.6
GTEX-13OW8-0011-R1a-SM-5L3HI 60-69 years, male 79.8
GTEX-1H3VE-0011-R1a-SM-A9G1K 40-49 years, male 77.0
GTEX-132Q8-0011-R1a-SM-5EGLK 60-69 years, male 74.7
GTEX-14LLW-0011-R1a-SM-5ZZVD 70-79 years, female 72.4
GTEX-1J8Q2-0011-R1a-SM-D4P2D 60-69 years, male 72.2
GTEX-13OVJ-0011-R1b-SM-5L3I6 50-59 years, female 72.1
GTEX-13FHO-0011-R1b-SM-5KLZG 60-69 years, male 70.4
GTEX-14PJO-0011-R1b-SM-6AJAK 60-69 years, male 69.9
Show allShow less

HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 45.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 45.2
FF:10169-103B7 60 years, female 49.8
FF:10153-102I9 76 years, female 40.7

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Max subtype nTPMi 21.6
Pig sample Sample description nTPM
Subiculum
nTPM: 21.6
Samples: 4

Max nTPM: 26.4
Min nTPM: 14.0
Sample A Female 21.6
Sample B Female 26.4
Sample C Male 24.4
Sample D Male 14.0
Dorsal hippocampus
nTPM: 15.8
Samples: 4

Max nTPM: 17.6
Min nTPM: 13.5
Sample A Female 14.8
Sample B Female 17.2
Sample C Male 17.6
Sample D Male 13.5
Entorhinal cortex
nTPM: 17.2
Samples: 4

Max nTPM: 20.2
Min nTPM: 13.6
Sample A Female 15.3
Sample B Female 19.8
Sample C Male 20.2
Sample D Male 13.6
Ventral hippocampus
nTPM: 20.0
Samples: 4

Max nTPM: 28.6
Min nTPM: 12.3
Sample A Female 15.9
Sample B Female 23.1
Sample C Male 28.6
Sample D Male 12.3

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Max subtype nTPMi 50.8
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 50.8
Samples: 4

Max nTPM: 54.0
Min nTPM: 47.6
Sample A Male 51.6
Sample B Male 47.6
Sample C Female 54.0
Sample D Female 50.1
Hippocampal formation
nTPM: 37.1
Samples: 4

Max nTPM: 39.0
Min nTPM: 31.4
Sample A Male 38.9
Sample B Male 31.4
Sample C Female 38.9
Sample D Female 39.0

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max subtype Expression energyi 2.4
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 2.4
1725 Antisense, RP_040604_01_B01, Mouse strain C57BL/6J (56 days, male) 2.4
1724 Antisense, RP_040604_01_B01, Mouse strain C57BL/6J (56 days, male) 2.2

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.


contact@proteinatlas.org