We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
SCD5
HPA
RESOURCES
  • TISSUE
  • BRAIN
  • SINGLE CELL
  • SUBCELLULAR
  • CANCER
  • BLOOD
  • CELL LINE
  • STRUCTURE & INTERACTION
ABOUT
  • INTRODUCTION
  • HISTORY
  • ORGANIZATION
  • PUBLICATIONS
  • ANTIBODY SUBMISSION
  • ANTIBODY AVAILABILITY
  • ACKNOWLEDGMENTS
  • CONTACT
NEWS
  • NEWS ARTICLES
  • PRESS ROOM
LEARN
  • DICTIONARY
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
  • METHODS
  • EDUCATIONAL VIDEOS
DATA
  • DOWNLOADABLE DATA
  • PUBLICATION DATA
  • RELEASE HISTORY
HELP
  • ANTIBODY VALIDATION
  • ASSAYS & ANNOTATION
  • DISCLAIMER
  • HELP & FAQ
  • PRIVACY STATEMENT
  • LICENCE & CITATION
Fields »
Search result

Field
Term
Gene name
Class
Subclass
Class
Keyword
Chromosome
External id
Tissue
Cell type
Expression
Antibody panel
Tissue
Main location
Patient ID
Annotation
Tissue
Category
Tau score
Cluster
Reliability
Brain region
Category
Tau score
Brain region
Category
Tau score
Brain region
Category
Tau score
Cluster
Reliability
Tissue
Cell type
Enrichment
Cell type
Category
Tau score
Cell type
Category
Tau score
Cell type
Category
Tau score
Cell lineage
Category
Tau score
Cluster
Cluster
Location
Searches
Location
Cell line
Class
Type
Phase
Reliability
Cancer
Prognosis
Cancer
Category
Cancer
Category
Tau score
Cluster
Variants
Interacting gene (ensg_id)
Type
Number of interactions
Pathway
Category
Score
Score
Score
Validation
Validation
Validation
Validation
Antibodies
Data type
Column


  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • SUBCELL

  • CANCER

  • BLOOD

  • CELL LINE

  • STRUCT & INT

  • SCD5
TISSUE PRIMARY DATA AMYGDALA Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Tissue proteome
Amygdala
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:285.7 nTPM
HPA Brain:379.4 nTPM
GTEx:285.7 nTPM
FANTOM5:491.2 Scaled Tags Per Million
Pig:73.1 nTPM

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

379.4
Sample id Sample description nTPM
Amygdala
nTPM: 379.4
2514 Male, age 75, right hemisphere 428.3
2814 Male, age 76, right hemisphere 397.0
2695 Female, age 67, right hemisphere 392.8
1987 Female, age 91, left hemisphere 341.2
2517 Female, age 94, left hemisphere 337.5
Basal amygdala
nTPM: 337.2
2609 Male, age 75, right hemisphere 443.4
1955 Male, age 76, both hemispheres 359.8
2110 Male, age 80, left hemisphere 325.2
2685 Female, age 94, left hemisphere 318.6
2243 Female, age 91, right hemisphere 304.9
2827 Female, age 67, right hemisphere 271.5
Central amygdala
nTPM: 378.5
2515 Male, age 75, right hemisphere 435.0
1905 Male, age 76, both hemispheres 370.9
2701 Female, age 91, right hemisphere 366.3
2239 Male, age 80, left hemisphere 364.7
2826 Female, age 94, left hemisphere 355.6
Corticomedial amygdala
nTPM: 337.8
2428 Male, age 75, right hemisphere 433.5
2829 Male, age 80, left hemisphere 357.5
2429 Female, age 94, left hemisphere 334.9
2242 Female, age 91, right hemisphere 332.8
2240 Male, age 76, both hemispheres 315.3
2535 Female, age 67, right hemisphere 252.8
Lateral amygdala
nTPM: 348.0
2516 Male, age 75, right hemisphere 421.8
1883 Male, age 76, both hemispheres 389.2
2256 Male, age 80, left hemisphere 344.7
2534 Female, age 94, left hemisphere 332.8
2255 Female, age 91, right hemisphere 319.7
2830 Female, age 67, right hemisphere 280.0

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

285.7
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 285.7
Samples: 152

Max nTPM: 495.6
Min nTPM: 11.1
Std nTPM: 64.2
Median nTPM: 282.3
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 495.6
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 436.9
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 421.3
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 417.0
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 404.8
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 400.6
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 388.7
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 384.5
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 378.3
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 373.8
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 373.6
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 369.0
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 369.0
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 364.4
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 359.3
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 356.5
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 354.3
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 354.0
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 352.0
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 351.2
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 349.4
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 348.6
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 345.9
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 345.3
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 345.0
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 343.7
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 343.6
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 340.7
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 340.1
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 338.5
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 338.5
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 337.4
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 335.3
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 333.4
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 333.1
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 332.6
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 331.1
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 327.6
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 326.9
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 326.6
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 326.5
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 326.4
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 325.3
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 324.3
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 319.8
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 319.1
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 318.9
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 317.8
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 313.3
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 312.9
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 311.9
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 310.8
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 310.1
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 309.5
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 308.4
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 308.1
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 305.9
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 304.8
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 304.6
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 303.8
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 303.5
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 303.4
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 302.4
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 301.7
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 299.5
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 299.4
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 299.2
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 298.5
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 296.7
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 295.4
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 292.2
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 289.2
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 287.7
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 287.6
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 287.3
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 284.5
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 280.1
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 279.2
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 279.2
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 279.0
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 277.8
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 276.5
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 273.0
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 272.7
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 272.4
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 268.0
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 266.7
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 266.6
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 265.9
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 265.6
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 265.4
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 264.8
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 264.4
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 264.2
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 264.1
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 263.7
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 263.4
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 261.9
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 261.2
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 260.5
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 260.1
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 258.8
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 258.5
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 258.4
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 258.1
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 255.1
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 254.4
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 254.2
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 253.5
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 252.6
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 251.8
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 251.4
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 249.7
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 248.4
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 247.0
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 245.1
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 243.9
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 243.7
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 243.4
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 242.8
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 242.7
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 241.3
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 241.0
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 238.8
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 238.0
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 237.8
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 236.0
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 235.9
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 234.3
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 233.7
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 233.6
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 230.7
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 221.2
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 220.5
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 219.2
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 216.8
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 215.2
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 215.0
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 211.0
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 210.5
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 210.1
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 208.9
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 196.3
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 188.8
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 170.3
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 166.7
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 164.5
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 152.8
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 140.7
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 140.6
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 130.9
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 11.1
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

491.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 491.2
FF:10151-102I7 76 years, female 491.2

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

73.1
Pig sample Sample description nTPM
Amygdala
nTPM: 73.1
Samples: 4

Max nTPM: 87.4
Min nTPM: 64.5
Sample A Female 87.4
Sample B Female 71.9
Sample C Male 64.5
Sample D Male 68.6

Contact

  • NEWS ARTICLES
  • PRESS ROOM

The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS

The Human Protein Atlas

  • DOWNLOADABLE DATA
  • LICENCE & CITATION
  • HELP & FAQ
The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.


contact@proteinatlas.org