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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:285.8 nTPM
HPA Brain:153.5 nTPM
GTEx:285.8 nTPM
FANTOM5:281.3 Scaled Tags Per Million
Mouse:284.3 nTPM

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

153.5
Sample id Sample description nTPM
Amygdala
nTPM: 153.5
2514 Male, age 75, right hemisphere 172.5
2695 Female, age 67, right hemisphere 164.5
2814 Male, age 76, right hemisphere 156.4
1987 Female, age 91, left hemisphere 145.6
2517 Female, age 94, left hemisphere 128.7
Basal amygdala
nTPM: 119.5
2609 Male, age 75, right hemisphere 130.9
1955 Male, age 76, both hemispheres 127.9
2110 Male, age 80, left hemisphere 122.6
2685 Female, age 94, left hemisphere 113.7
2827 Female, age 67, right hemisphere 111.0
2243 Female, age 91, right hemisphere 110.9
Central amygdala
nTPM: 131.6
2826 Female, age 94, left hemisphere 160.3
1905 Male, age 76, both hemispheres 136.2
2515 Male, age 75, right hemisphere 134.8
2239 Male, age 80, left hemisphere 115.2
2701 Female, age 91, right hemisphere 111.2
Corticomedial amygdala
nTPM: 122.8
2428 Male, age 75, right hemisphere 141.0
2240 Male, age 76, both hemispheres 133.6
2829 Male, age 80, left hemisphere 128.3
2242 Female, age 91, right hemisphere 121.3
2429 Female, age 94, left hemisphere 111.8
2535 Female, age 67, right hemisphere 100.6
Lateral amygdala
nTPM: 122.9
2516 Male, age 75, right hemisphere 145.0
1883 Male, age 76, both hemispheres 134.0
2534 Female, age 94, left hemisphere 130.5
2830 Female, age 67, right hemisphere 124.9
2256 Male, age 80, left hemisphere 104.9
2255 Female, age 91, right hemisphere 97.9

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

285.8
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 285.8
Samples: 152

Max nTPM: 552.5
Min nTPM: 192.5
Std nTPM: 68.3
Median nTPM: 268.1
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 552.5
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 538.3
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 530.6
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 517.8
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 495.9
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 484.7
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 472.6
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 466.7
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 445.1
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 412.9
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 403.8
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 392.7
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 384.1
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 362.4
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 351.0
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 348.7
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 341.0
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 340.7
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 340.1
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 340.1
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 339.0
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 337.6
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 336.9
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 336.6
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 334.8
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 332.0
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 329.4
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 327.9
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 327.7
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 323.3
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 317.9
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 316.1
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 315.2
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 314.4
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 312.4
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 309.7
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 306.2
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 305.3
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 305.2
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 301.3
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 300.3
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 300.1
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 300.1
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 299.4
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 298.3
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 286.8
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 286.4
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 285.8
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 285.4
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 284.9
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 283.0
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 283.0
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 281.8
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 280.7
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 280.6
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 280.4
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 279.8
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 279.6
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 278.7
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 278.7
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 278.5
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 277.8
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 277.2
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 276.6
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 276.2
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 275.1
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 274.6
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 273.6
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 273.6
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 273.6
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 270.6
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 269.5
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 268.9
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 268.9
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 268.9
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 268.1
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 268.1
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 268.0
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 267.5
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 266.2
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 266.1
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 264.5
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 264.1
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 263.6
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 263.3
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 263.2
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 262.6
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 262.5
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 262.2
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 260.1
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 259.9
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 259.7
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 259.5
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 259.5
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 259.0
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 258.9
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 257.9
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 257.3
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 256.7
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 256.6
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 254.9
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 254.4
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 254.1
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 253.6
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 253.1
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 253.1
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 252.7
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 251.2
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 251.0
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 249.6
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 249.1
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 247.9
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 246.3
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 245.5
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 245.3
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 244.4
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 244.1
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 243.8
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 242.3
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 240.3
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 239.3
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 238.4
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 236.8
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 236.0
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 235.3
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 233.7
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 231.4
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 231.3
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 231.3
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 230.6
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 228.9
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 228.3
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 227.8
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 227.4
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 227.3
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 224.9
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 224.6
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 223.8
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 223.7
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 223.2
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 221.9
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 221.8
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 214.7
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 213.4
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 213.0
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 213.0
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 211.6
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 210.2
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 204.9
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 199.8
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 196.3
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 192.5
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

281.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 281.3
FF:10151-102I7 76 years, female 281.3

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

284.3
Mouse sample Sample description nTPM
Amygdala
nTPM: 284.3
Samples: 4

Max nTPM: 292.9
Min nTPM: 278.6
Sample A Male 278.6
Sample B Male 292.9
Sample C Female 278.6
Sample D Female 287.0

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