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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:360.5 nTPM
HPA Brain:188.8 nTPM
GTEx:360.5 nTPM
FANTOM5:383.8 Scaled Tags Per Million

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

188.8
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 170.4
1981 Female, age 72, midline 213.5
2048 Male, age 55, midline 180.6
2816 Male, age 47, midline 159.4
2565 Male, age 75, midline 155.8
2194 Female, age 79, both hemispheres 142.6
Cervical spinal cord, dorsal horn
nTPM: 182.6
2173 Female, age 72, unknown 236.9
2296 Male, age 66, both hemispheres 203.0
2069 Male, age 47, both hemispheres 193.6
2721 Male, age 90, both hemispheres 160.6
1877 Male, age 55, unknown 159.7
2297 Male, age 75, both hemispheres 142.0
Cervical spinal cord, ventral horn
nTPM: 188.8
2098 Female, age 72, unknown 240.3
2480 Male, age 75, both hemispheres 207.7
2809 Male, age 90, both hemispheres 202.9
2295 Male, age 66, both hemispheres 179.1
2068 Male, age 55, unknown 169.9
2820 Female, age 79, both hemispheres 132.8

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

360.5
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 360.5
Samples: 159

Max nTPM: 573.7
Min nTPM: 196.5
Std nTPM: 64.4
Median nTPM: 359.1
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 573.7
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 534.6
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 523.6
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 500.4
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 488.3
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 486.0
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 482.4
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 479.8
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 476.5
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 474.7
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 468.6
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 468.2
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 463.9
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 463.8
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 455.7
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 454.4
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 450.8
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 446.4
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 444.6
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 441.5
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 438.2
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 437.5
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 434.8
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 428.6
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 427.9
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 424.4
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 420.0
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 416.1
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 410.5
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 408.6
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 402.5
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 400.3
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 399.9
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 399.7
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 399.7
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 399.5
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 399.1
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 398.9
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 395.4
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 393.6
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 392.5
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 392.2
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 388.3
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 385.9
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 382.7
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 381.5
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 381.2
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 380.6
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 380.2
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 380.1
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 379.5
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 378.7
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 376.6
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 376.3
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 375.9
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 375.8
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 374.2
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 373.8
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 371.9
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 371.9
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 371.5
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 371.1
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 370.7
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 370.7
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 370.5
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 368.9
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 368.8
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 368.7
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 366.7
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 366.5
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 366.3
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 366.2
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 365.9
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 364.9
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 363.0
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 362.1
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 361.6
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 361.3
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 359.1
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 359.1
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 357.9
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 357.9
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 357.8
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 356.9
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 356.6
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 353.1
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 352.3
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 351.7
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 351.3
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 350.8
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 350.6
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 348.4
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 348.1
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 346.5
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 344.3
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 344.2
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 342.1
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 340.1
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 340.0
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 339.5
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 337.7
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 337.6
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 337.5
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 335.5
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 333.9
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 333.5
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 330.6
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 330.6
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 329.9
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 326.4
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 325.0
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 323.4
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 323.3
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 323.2
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 321.7
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 320.9
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 320.8
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 320.7
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 319.7
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 319.6
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 316.4
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 316.2
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 315.6
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 314.6
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 313.0
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 312.8
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 312.5
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 311.1
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 306.5
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 304.8
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 304.4
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 302.9
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 301.7
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 300.6
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 296.5
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 295.6
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 295.5
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 291.4
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 290.6
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 288.6
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 287.5
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 286.1
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 282.8
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 279.5
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 276.7
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 274.6
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 272.5
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 271.9
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 271.3
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 270.7
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 267.9
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 262.1
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 260.2
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 256.5
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 254.0
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 244.6
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 231.9
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 196.8
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 196.5
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

383.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 383.8
FF:10181-103D1 60 years, female 388.3
FF:10159-103A6 76 years, female 379.4

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