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TISSUE PRIMARY DATA SMALL INTESTINE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Small intestine
Tissue proteome
Intestine
SMALL INTESTINE - Expression summary
Protein expression
Small intestinei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glandular cells: High
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:434.1 nTPM
HPA:434.0 nTPM
GTEx:434.1 nTPM
FANTOM5:802.8 Scaled Tags Per Million

SMALL INTESTINE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA056420Antibody CAB013007
Glandular cells HighHigh



SMALL INTESTINE - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Average nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

434.0
overview
Male, age 65
Small intestine sample 232
nTPM: 515.9
Cell types%
Glandular cells:
55

Smooth muscle cells:
5

Other cell types:
40

overview
Male, age 39
Small intestine sample 233
nTPM: 447
Cell types%
Glandular cells:
40

Smooth muscle cells:
5

Other cell types:
55

overview
Male, age 68
Small intestine sample 234
nTPM: 374.1
Cell types%
Glandular cells:
30

Smooth muscle cells:
15

Other cell types:
55

N/A
Male, age 85
Small intestine sample 235
nTPM: 398.9

SMALL INTESTINE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

434.1
GTEx sample id Sample description nTPM
Small Intestine - Terminal Ileum
Average nTPM: 434.1
Samples: 187

Max nTPM: 717.3
Min nTPM: 283.7
Std nTPM: 76.0
Median nTPM: 423.8
GTEX-1EMGI-2826-SM-7IGMR 60-69 years, male 717.3
GTEX-Y5V5-1826-SM-4VDS5 60-69 years, female 680.3
GTEX-1NSGN-2126-SM-DPRYN 50-59 years, male 661.9
GTEX-1MGNQ-2326-SM-EV7BG 40-49 years, male 639.3
GTEX-1LH75-1926-SM-DIPGD 50-59 years, female 600.1
GTEX-1R9JW-1926-SM-EVR4J 30-39 years, female 599.9
GTEX-1R9K4-2326-SM-E6CRB 60-69 years, male 599.5
GTEX-15EU6-1826-SM-7PC1W 50-59 years, male 597.6
GTEX-1OKEX-1126-SM-DTXEB 60-69 years, male 586.3
GTEX-1JJE9-2226-SM-CXZJM 70-79 years, male 584.0
GTEX-1PIEJ-1526-SM-E6CP8 20-29 years, female 570.9
GTEX-16NGA-1126-SM-7KFSY 40-49 years, female 568.9
GTEX-Y5LM-1626-SM-4VDTB 40-49 years, female 549.1
GTEX-13W3W-2026-SM-5K7UL 60-69 years, female 548.2
GTEX-1QP28-1726-SM-E6CRK 50-59 years, female 542.2
GTEX-ZQUD-0926-SM-57WE3 30-39 years, male 540.3
GTEX-1GMR2-1026-SM-7MKHJ 50-59 years, male 540.0
GTEX-1S82Z-1826-SM-E9TIK 30-39 years, female 539.9
GTEX-1JMQK-2426-SM-CXZJU 60-69 years, male 533.6
GTEX-Y3IK-1726-SM-4YCCR 50-59 years, female 531.2
GTEX-1192X-2526-SM-59868 50-59 years, male 528.1
GTEX-13OVI-1926-SM-5IJCG 60-69 years, female 522.3
GTEX-131XE-0926-SM-5HL7J 50-59 years, male 522.0
GTEX-1BAJH-2526-SM-7IGOT 70-79 years, male 520.6
GTEX-1I1GT-1826-SM-ARZLW 60-69 years, female 519.4
GTEX-ZXES-1526-SM-5NQ95 30-39 years, female 516.7
GTEX-148VJ-2226-SM-5NQ9M 70-79 years, male 516.5
GTEX-1L5NE-1826-SM-EV79T 50-59 years, male 516.3
GTEX-17MFQ-1026-SM-7KFSZ 20-29 years, male 515.5
GTEX-XPVG-1726-SM-4B65W 50-59 years, male 510.2
GTEX-117YX-0326-SM-5GICL 50-59 years, male 505.4
GTEX-WRHK-1026-SM-4MVOD 20-29 years, female 504.7
GTEX-YEC4-1726-SM-4W21E 40-49 years, male 504.0
GTEX-Y3I4-1326-SM-4TT8Z 50-59 years, male 503.8
GTEX-13X6H-1826-SM-7EWCZ 50-59 years, female 502.4
GTEX-1GL5R-2026-SM-7MKHP 50-59 years, male 501.9
GTEX-11TUW-1926-SM-5BC58 60-69 years, male 498.6
GTEX-ZAB5-1526-SM-5HL9P 50-59 years, male 496.9
GTEX-1PDJ9-1826-SM-E9U66 20-29 years, male 490.8
GTEX-14PK6-1626-SM-6871I 70-79 years, female 488.7
GTEX-1R7EV-1226-SM-DTX82 40-49 years, male 487.7
GTEX-1R9PM-1626-SM-DPRY9 20-29 years, male 485.0
GTEX-183FY-1626-SM-793D8 20-29 years, male 484.8
GTEX-1B8KE-1726-SM-7IGMN 50-59 years, male 484.0
GTEX-1RAZQ-2226-SM-DPRZR 30-39 years, male 478.5
GTEX-1OJC3-1626-SM-E9U65 20-29 years, male 477.1
GTEX-13NYB-1826-SM-5J1N3 40-49 years, male 475.1
GTEX-16A39-1426-SM-6LLI6 30-39 years, female 474.3
GTEX-WYJK-1526-SM-4ONCW 50-59 years, male 473.6
GTEX-ZTPG-2626-SM-57WFX 20-29 years, female 472.7
GTEX-1QCLZ-2126-SM-EWRNC 60-69 years, female 472.5
GTEX-14XAO-1926-SM-6ETZO 60-69 years, female 472.3
GTEX-14BMU-1426-SM-5TDE5 20-29 years, female 469.9
GTEX-11LCK-1926-SM-5A5KE 30-39 years, male 469.7
GTEX-WFG7-1726-SM-4LVME 20-29 years, male 469.7
GTEX-1RAZA-1826-SM-DTXA2 20-29 years, male 469.7
GTEX-1QP2A-2426-SM-EXOJA 50-59 years, male 467.1
GTEX-ZA64-1226-SM-5HL7B 20-29 years, male 465.6
GTEX-X5EB-1626-SM-4E3IV 40-49 years, male 457.7
GTEX-14DAR-1426-SM-5RQIR 50-59 years, male 456.2
GTEX-1AMFI-1926-SM-731F2 50-59 years, female 455.0
GTEX-1S5ZA-1326-SM-EV7BB 20-29 years, male 453.3
GTEX-WFG8-1626-SM-4LVMB 20-29 years, male 451.5
GTEX-1B8KZ-1126-SM-7IGLX 50-59 years, male 450.7
GTEX-17KNJ-1626-SM-718AL 50-59 years, male 448.8
GTEX-14PJ6-1726-SM-6AJBN 60-69 years, female 443.7
GTEX-1MUQO-2426-SM-EAZ5A 60-69 years, male 443.6
GTEX-WY7C-1826-SM-4ONCE 50-59 years, male 443.5
GTEX-14PKU-1626-SM-6871C 40-49 years, female 443.4
GTEX-16MTA-1526-SM-6LPJB 50-59 years, male 443.3
GTEX-1399R-2026-SM-5K7WN 30-39 years, male 443.2
GTEX-ZG7Y-1926-SM-DNZZ5 50-59 years, male 442.8
GTEX-139YR-2226-SM-5IFFW 50-59 years, male 441.1
GTEX-1QW4Y-1226-SM-EWRMY 30-39 years, male 440.8
GTEX-145LT-1026-SM-5LU9O 40-49 years, male 440.0
GTEX-16AAH-1426-SM-7KFTR 50-59 years, male 439.0
GTEX-1H11D-2526-SM-9JGGU 40-49 years, male 438.2
GTEX-ZYFG-2026-SM-5E43Y 60-69 years, female 438.1
GTEX-1CB4F-1826-SM-7MGXI 60-69 years, male 437.9
GTEX-Y111-2226-SM-4SOJB 50-59 years, male 437.8
GTEX-139T6-1026-SM-5IJGC 50-59 years, male 437.0
GTEX-13RTK-0826-SM-5Q5C6 20-29 years, male 436.5
GTEX-11P82-0826-SM-5P9GU 20-29 years, male 435.7
GTEX-12WSK-1526-SM-5CVNO 40-49 years, female 433.3
GTEX-1J8Q3-2526-SM-CNNQ4 60-69 years, male 432.6
GTEX-1RAZR-1826-SM-E6CRE 40-49 years, male 432.3
GTEX-YB5E-1526-SM-5IFIE 40-49 years, male 430.8
GTEX-WFON-1526-SM-4LVMP 40-49 years, male 429.7
GTEX-14C39-1826-SM-5ZZW4 40-49 years, male 429.4
GTEX-14PKV-2026-SM-6AJ9A 20-29 years, female 429.4
GTEX-1C475-1426-SM-793CH 40-49 years, female 429.4
GTEX-1QPFJ-2626-SM-DPRZU 30-39 years, female 427.8
GTEX-111YS-1426-SM-5GID8 60-69 years, male 426.5
GTEX-111CU-1326-SM-5NQ8L 50-59 years, male 423.8
GTEX-VJYA-0926-SM-4KL1N 60-69 years, male 421.3
GTEX-13113-1226-SM-5EGHT 60-69 years, female 420.6
GTEX-1KXAM-2026-SM-DHXKI 60-69 years, male 420.6
GTEX-1399U-2126-SM-5IFEZ 50-59 years, female 420.1
GTEX-XGQ4-1326-SM-4GIDU 50-59 years, male 418.8
GTEX-ZZ64-0526-SM-5GZXM 20-29 years, male 418.2
GTEX-11VI4-1626-SM-5EQKO 40-49 years, female 414.4
GTEX-15G1A-1726-SM-6LPI4 30-39 years, male 412.2
GTEX-1CAMS-2426-SM-7DHMV 40-49 years, female 411.7
GTEX-WEY5-1526-SM-4LMJF 40-49 years, female 411.6
GTEX-1AX8Z-2526-SM-731E3 60-69 years, male 409.9
GTEX-13PL7-2626-SM-5IFH4 60-69 years, female 409.4
GTEX-1K9T9-2726-SM-D4P3E 50-59 years, female 409.3
GTEX-1122O-1326-SM-5H11F 60-69 years, female 409.2
GTEX-ZF2S-1726-SM-57WFT 50-59 years, female 407.3
GTEX-1J8QM-1026-SM-C1YQA 60-69 years, female 405.4
GTEX-WFJO-0926-SM-4LVM2 30-39 years, male 405.2
GTEX-1CAMR-0826-SM-7MKFK 20-29 years, male 404.8
GTEX-XMK1-1826-SM-4B66F 40-49 years, male 404.4
GTEX-ZF29-1626-SM-4WKFJ 60-69 years, female 402.8
GTEX-YFCO-1326-SM-664NV 40-49 years, male 402.6
GTEX-131XF-1326-SM-5GCMQ 60-69 years, male 401.2
GTEX-1R7EU-1326-SM-E6CQ6 60-69 years, male 401.2
GTEX-1GMR3-2726-SM-7MKFB 40-49 years, male 400.9
GTEX-ZLWG-1626-SM-DNZZ1 50-59 years, female 399.8
GTEX-1LBAC-1526-SM-CXZKU 20-29 years, male 399.2
GTEX-1IKOE-1926-SM-ARU7V 30-39 years, female 398.7
GTEX-14PN3-2026-SM-68729 60-69 years, female 397.7
GTEX-1LGOU-1426-SM-D3L8N 20-29 years, female 397.3
GTEX-XUZC-1426-SM-4BRV3 30-39 years, female 396.6
GTEX-14E6E-1626-SM-5RQI7 30-39 years, male 395.5
GTEX-18QFQ-1626-SM-72D7H 30-39 years, male 395.2
GTEX-ZPIC-2326-SM-57WDW 40-49 years, female 392.2
GTEX-13111-1426-SM-5DUW3 50-59 years, male 391.7
GTEX-13QBU-1926-SM-5IJEW 40-49 years, female 391.7
GTEX-1F75I-2526-SM-9WPOZ 40-49 years, male 389.8
GTEX-14PJN-0826-SM-686ZL 30-39 years, male 388.5
GTEX-Y114-1426-SM-4TT6W 50-59 years, female 386.2
GTEX-ZQG8-2526-SM-57WEQ 60-69 years, female 385.4
GTEX-13O61-1326-SM-5KM31 60-69 years, male 382.5
GTEX-145ME-0926-SM-5O9AR 40-49 years, female 382.2
GTEX-ZPCL-1726-SM-57WEO 60-69 years, female 382.2
GTEX-ZVP2-1726-SM-5GU5P 50-59 years, male 382.2
GTEX-ZTX8-0526-SM-59HLD 20-29 years, male 381.2
GTEX-13D11-0726-SM-5LZZB 50-59 years, female 379.6
GTEX-VUSG-1726-SM-4KKZL 50-59 years, male 379.3
GTEX-11P7K-1626-SM-5GU63 30-39 years, male 377.5
GTEX-WH7G-1626-SM-4LVMY 40-49 years, male 376.2
GTEX-Y9LG-1626-SM-5IFHM 30-39 years, male 375.2
GTEX-144GM-1026-SM-79OKU 20-29 years, male 374.0
GTEX-ZDTT-1726-SM-5HL69 60-69 years, male 373.7
GTEX-14PJ3-1326-SM-664O7 50-59 years, male 372.2
GTEX-ZLV1-1126-SM-4WWBW 60-69 years, female 371.1
GTEX-13CF3-1226-SM-5LZXN 60-69 years, female 369.0
GTEX-1R9K5-2026-SM-E6CPS 50-59 years, male 368.9
GTEX-15DZA-0826-SM-6AJBF 30-39 years, female 367.7
GTEX-1C64O-2526-SM-79ONO 60-69 years, male 367.5
GTEX-WHSB-1026-SM-4M1XN 50-59 years, male 367.0
GTEX-X15G-1426-SM-4PQZK 50-59 years, female 367.0
GTEX-ZP4G-1626-SM-57WGD 20-29 years, female 366.7
GTEX-1HSMQ-2226-SM-C1YRD 50-59 years, male 365.4
GTEX-XBED-1426-SM-4AT4G 60-69 years, male 364.2
GTEX-XXEK-1026-SM-4BRUW 50-59 years, male 364.1
GTEX-18A66-2526-SM-7KFTZ 60-69 years, male 363.5
GTEX-ZVZP-1826-SM-5GZXB 50-59 years, male 363.2
GTEX-UPK5-2026-SM-4JBIM 40-49 years, male 361.2
GTEX-11I78-1126-SM-5A5K5 50-59 years, female 360.5
GTEX-11DXZ-1326-SM-5H11X 50-59 years, male 360.2
GTEX-13FH7-1226-SM-5IJFK 50-59 years, female 359.9
GTEX-ZLFU-1526-SM-4WWBT 40-49 years, male 359.0
GTEX-1H1DE-1426-SM-9JGHV 20-29 years, male 356.4
GTEX-13O21-1026-SM-5IJDU 50-59 years, male 353.7
GTEX-11EQ9-1326-SM-5985X 30-39 years, male 353.2
GTEX-133LE-1426-SM-5IFH1 20-29 years, female 352.7
GTEX-11XUK-1426-SM-5EQMG 40-49 years, female 352.4
GTEX-ZC5H-2326-SM-4WAYT 40-49 years, female 350.7
GTEX-131XG-1726-SM-5LZUR 50-59 years, female 350.1
GTEX-13FTW-2026-SM-5IJE2 40-49 years, male 347.2
GTEX-1JN76-1126-SM-C1YRL 20-29 years, female 344.3
GTEX-11NSD-1726-SM-5N9C3 20-29 years, male 340.9
GTEX-12BJ1-1926-SM-5HL9Z 60-69 years, male 339.8
GTEX-11DXX-1626-SM-5H11H 60-69 years, female 339.5
GTEX-ZVT2-2126-SM-5NQ93 50-59 years, female 338.5
GTEX-YF7O-1826-SM-5IFIU 50-59 years, male 329.7
GTEX-1399S-2026-SM-5KM4B 30-39 years, female 323.7
GTEX-Z9EW-0926-SM-5CVMM 40-49 years, male 322.9
GTEX-17HHE-1726-SM-79OKT 50-59 years, male 321.0
GTEX-ZTSS-0926-SM-59865 40-49 years, male 320.6
GTEX-1497J-1926-SM-5TDCC 60-69 years, male 320.2
GTEX-ZEX8-1826-SM-57WBH 50-59 years, male 315.6
GTEX-1JK1U-1226-SM-CNNPN 60-69 years, male 306.3
GTEX-WQUQ-2426-SM-4MVNW 60-69 years, male 285.0
GTEX-XAJ8-0526-SM-47JYK 40-49 years, male 283.7
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SMALL INTESTINE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

802.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Small intestine
Scaled Tags Per Million: 802.8
FF:10024-101D6 15,40,85 years, mixed 802.8

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