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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:120.5 nTPM
HPA Brain:101.5 nTPM
GTEx:120.5 nTPM
FANTOM5:69.2 Scaled Tags Per Million

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

101.5
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 95.5
1981 Female, age 72, midline 110.8
2565 Male, age 75, midline 108.1
2194 Female, age 79, both hemispheres 96.6
2816 Male, age 47, midline 81.0
2048 Male, age 55, midline 80.8
Cervical spinal cord, dorsal horn
nTPM: 91.9
2173 Female, age 72, unknown 106.8
2069 Male, age 47, both hemispheres 97.7
2296 Male, age 66, both hemispheres 94.2
1877 Male, age 55, unknown 89.8
2721 Male, age 90, both hemispheres 86.5
2297 Male, age 75, both hemispheres 76.5
Cervical spinal cord, ventral horn
nTPM: 101.5
2480 Male, age 75, both hemispheres 125.7
2098 Female, age 72, unknown 122.7
2809 Male, age 90, both hemispheres 112.6
2295 Male, age 66, both hemispheres 97.1
2068 Male, age 55, unknown 78.5
2820 Female, age 79, both hemispheres 72.5

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

120.5
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 120.5
Samples: 159

Max nTPM: 250.5
Min nTPM: 60.0
Std nTPM: 29.1
Median nTPM: 116.5
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 250.5
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 224.8
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 185.9
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 181.6
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 175.4
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 173.8
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 172.0
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 171.7
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 171.6
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 168.8
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 166.5
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 166.4
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 164.9
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 163.5
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 163.2
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 155.8
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 154.4
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 153.5
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 152.5
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 152.3
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 151.1
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 150.9
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 150.9
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 150.3
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 150.3
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 148.6
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 148.1
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 148.1
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 146.9
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 146.7
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 146.1
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 145.8
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 144.9
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 144.6
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 143.5
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 142.9
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 141.3
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 141.0
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 140.5
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 140.4
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 139.8
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 139.1
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 135.0
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 133.2
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 133.1
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 132.5
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 132.4
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 132.2
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 132.1
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 131.6
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 130.7
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 129.6
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 129.0
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 127.6
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 127.2
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 127.0
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 126.6
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 126.0
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 125.9
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 125.5
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 125.3
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 125.2
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 125.0
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 123.8
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 123.4
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 122.1
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 121.8
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 121.4
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 120.4
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 120.3
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 120.2
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 119.6
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 118.7
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 118.6
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 118.2
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 118.1
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 117.6
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 116.9
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 116.5
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 116.5
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 116.2
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 115.7
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 115.7
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 115.6
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 115.5
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 114.8
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 113.4
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 113.0
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 112.7
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 112.4
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 112.2
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 111.7
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 110.8
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 110.7
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 110.1
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 109.7
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 109.6
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 109.5
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 109.4
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 109.3
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 109.1
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 108.8
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 108.3
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 108.0
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 107.7
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 107.0
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 106.4
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 105.7
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 105.7
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 105.0
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 104.4
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 104.1
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 102.9
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 101.9
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 101.7
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 101.6
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 101.5
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 101.1
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 101.0
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 100.7
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 99.1
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 97.8
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 97.2
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 96.9
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 96.8
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 96.7
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 94.9
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 94.9
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 94.7
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 94.5
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 93.1
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 92.8
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 92.8
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 91.6
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 91.5
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 90.3
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 90.1
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 87.7
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 87.5
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 87.2
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 85.9
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 85.8
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 85.5
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 85.4
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 83.6
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 83.6
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 83.4
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 83.2
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 83.1
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 82.7
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 82.5
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 82.0
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 79.9
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 79.7
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 79.1
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 79.1
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 77.8
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 73.1
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 60.0
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

69.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 69.2
FF:10181-103D1 60 years, female 84.4
FF:10159-103A6 76 years, female 54.0

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