We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
HIGD2A
HPA
RESOURCES
  • TISSUE
  • BRAIN
  • SINGLE CELL
  • SUBCELLULAR
  • CANCER
  • BLOOD
  • CELL LINE
  • STRUCTURE & INTERACTION
ABOUT
  • INTRODUCTION
  • HISTORY
  • ORGANIZATION
  • PUBLICATIONS
  • ANTIBODY SUBMISSION
  • ANTIBODY AVAILABILITY
  • ACKNOWLEDGMENTS
  • CONTACT
NEWS
  • NEWS ARTICLES
  • PRESS ROOM
LEARN
  • DICTIONARY
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
  • METHODS
  • EDUCATIONAL VIDEOS
DATA
  • DOWNLOADABLE DATA
  • PUBLICATION DATA
  • RELEASE HISTORY
HELP
  • ANTIBODY VALIDATION
  • ASSAYS & ANNOTATION
  • DISCLAIMER
  • HELP & FAQ
  • PRIVACY STATEMENT
  • LICENCE & CITATION
Fields »
Search result

Field
Term
Gene name
Class
Subclass
Class
Keyword
Chromosome
External id
Tissue
Cell type
Expression
Antibody panel
Tissue
Main location
Patient ID
Annotation
Tissue
Category
Tau score
Cluster
Reliability
Brain region
Category
Tau score
Brain region
Category
Tau score
Brain region
Category
Tau score
Cluster
Reliability
Tissue
Cell type
Enrichment
Cell type
Category
Tau score
Cell type
Category
Tau score
Cell type
Category
Tau score
Cell lineage
Category
Tau score
Cluster
Cluster
Location
Searches
Location
Cell line
Class
Type
Phase
Reliability
Cancer
Prognosis
Cancer
Category
Cancer
Category
Tau score
Cluster
Variants
Interacting gene (ensg_id)
Type
Number of interactions
Pathway
Category
Score
Score
Score
Validation
Validation
Validation
Validation
Antibodies
Data type
Column


  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • SUBCELL

  • CANCER

  • BLOOD

  • CELL LINE

  • STRUCT & INT

  • HIGD2A
BRAIN THALAMUS Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Thalamus
THALAMUS - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
HPA Brain:109.9 nTPM
FANTOM5:56.1 Scaled Tags Per Million

THALAMUS - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

109.9
Sample id Sample description nTPM
Anterior thalamic nucleus, ventral
nTPM: 84.9
2396 Male, age 61, right hemisphere 93.1
2497 Male, age 66, unknown 82.8
2032 Female, age 42, unknown 78.7
Centromedial thalamic nucleus
nTPM: 77.0
2401 Male, age 76, right hemisphere 82.9
2279 Female, age 85, left hemisphere 71.0
Habenula
nTPM: 92.5
1957 Male, age 80, both hemispheres 98.2
2276 Male, age 66, unknown 94.2
2203 Male, age 61, left hemisphere 93.0
2252 Male, age 62, unknown 84.4
Lateral geniculate body
nTPM: 90.9
2035 Female, age 72, unknown 111.1
2106 Female, age 67, right hemisphere 98.4
2857 Male, age 74, right hemisphere 96.0
2575 Female, age 94, right hemisphere 93.8
2399 Male, age 61, left hemisphere 85.6
1953 Male, age 62, unknown 82.3
2659 Male, age 66, unknown 79.9
2841 Male, age 80, both hemispheres 79.8
Lateral thalamic nuclei
nTPM: 93.9
2573 Female, age 94, left hemisphere 116.0
2577 Male, age 74, both hemispheres 94.3
2765 Female, age 67, both hemispheres 90.4
1903 Male, age 76, left hemisphere 89.8
2661 Female, age 72, unknown 79.1
Medial dorsal thalamic nucleus
nTPM: 97.4
2572 Female, age 94, right hemisphere 154.6
2498 Male, age 66, unknown 103.8
1810 Male, age 48, unknown 103.1
2026 Male, age 62, unknown 100.2
2492 Male, age 75, right hemisphere 99.4
1859 Male, age 76, both hemispheres 97.1
1930 Female, age 42, unknown 93.8
1971 Male, age 61, right hemisphere 91.6
2402 Female, age 67, both hemispheres 91.4
2576 Male, age 74, both hemispheres 88.4
2283 Male, age 80, right hemisphere 88.3
2039 Female, age 72, unknown 85.6
2660 Female, age 72, unknown 69.0
Medial geniculate body
nTPM: 97.5
2650 Female, age 94, left hemisphere 113.4
2571 Male, age 75, right hemisphere 106.9
1811 Female, age 42, unknown 106.4
2049 Male, age 76, both hemispheres 96.2
2207 Male, age 80, right hemisphere 89.9
2657 Male, age 74, right hemisphere 86.2
2217 Female, age 72, unknown 83.6
Nucleus reuniens
nTPM: 76.1
2212 Female, age 67, left hemisphere 84.6
2205 Male, age 80, left hemisphere 73.9
2210 Female, age 85, left hemisphere 69.9
Nucleus rhomboideus
nTPM: 84.0
2213 Female, age 67, left hemisphere 93.6
2206 Male, age 80, both hemispheres 92.9
2280 Female, age 85, left hemisphere 65.5
Posterior thalamic nucleus
nTPM: 109.9
2649 Female, age 94, both hemispheres 171.2
2655 Male, age 74, right hemisphere 99.6
2495 Female, age 67, right hemisphere 84.9
2266 Male, age 76, right hemisphere 83.9
Pulvinar
nTPM: 89.6
2499 Male, age 66, unknown 97.2
1932 Male, age 80, right hemisphere 93.5
1972 Male, age 62, unknown 91.7
2496 Female, age 67, right hemisphere 90.6
1929 Male, age 48, unknown 89.9
2398 Male, age 61, left hemisphere 89.2
2724 Male, age 74, right hemisphere 87.9
2214 Male, age 76, right hemisphere 87.7
2582 Female, age 72, unknown 87.7
1899 Female, age 42, unknown 80.5
Subthalamic nucleus
nTPM: 78.3
2282 Male, age 61, both hemispheres 84.8
2124 Male, age 62, unknown 81.6
2658 Male, age 74, both hemispheres 81.1
2275 Male, age 66, unknown 80.4
2779 Female, age 42, unknown 79.2
2406 Female, age 72, unknown 76.8
2056 Female, age 72, unknown 73.1
2216 Male, age 48, unknown 69.2
Ventral posterolateral thalamic nucleus
nTPM: 86.1
2197 Male, age 80, both hemispheres 102.7
2570 Male, age 75, right hemisphere 92.8
2740 Male, age 76, right hemisphere 85.5
2578 Male, age 74, both hemispheres 84.7
2397 Male, age 61, right hemisphere 84.1
2581 Female, age 72, unknown 66.6
Ventral posteromedial thalamic nucleus
nTPM: 88.9
2202 Male, age 61, left hemisphere 99.7
2758 Male, age 80, both hemispheres 91.3
2281 Male, age 75, right hemisphere 91.0
2653 Male, age 74, both hemispheres 82.8
2127 Male, age 76, right hemisphere 79.7
Ventral thalamic nuclei
nTPM: 85.6
1860 Male, age 76, both hemispheres 93.7
2580 Male, age 66, unknown 90.5
1845 Male, age 48, unknown 89.2
2285 Male, age 62, unknown 89.2
2652 Male, age 74, left hemisphere 83.9
1912 Female, age 42, unknown 83.6
2291 Female, age 72, unknown 81.9
2204 Male, age 80, both hemispheres 81.8
2858 Female, age 72, unknown 76.3
Zona incerta
nTPM: 74.4
2822 Male, age 74, right hemisphere 78.2
2208 Male, age 80, right hemisphere 77.5
2215 Male, age 66, unknown 77.5
2403 Male, age 62, unknown 71.4
2663 Female, age 72, unknown 67.4

THALAMUS - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

56.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Thalamus
Scaled Tags Per Million: 56.1
FF:10154-103A1 76 years, female 56.1

Contact

  • NEWS ARTICLES
  • PRESS ROOM

The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS

The Human Protein Atlas

  • DOWNLOADABLE DATA
  • LICENCE & CITATION
  • HELP & FAQ
The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.


contact@proteinatlas.org