We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
DAAM2
HPA
RESOURCES
  • TISSUE
  • BRAIN
  • SINGLE CELL
  • SUBCELLULAR
  • CANCER
  • BLOOD
  • CELL LINE
  • STRUCTURE & INTERACTION
ABOUT
  • INTRODUCTION
  • HISTORY
  • ORGANIZATION
  • PUBLICATIONS
  • ANTIBODY SUBMISSION
  • ANTIBODY AVAILABILITY
  • ACKNOWLEDGMENTS
  • CONTACT
NEWS
  • NEWS ARTICLES
  • PRESS ROOM
LEARN
  • DICTIONARY
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
  • METHODS
  • EDUCATIONAL VIDEOS
DATA
  • DOWNLOADABLE DATA
  • PUBLICATION DATA
  • RELEASE HISTORY
HELP
  • ANTIBODY VALIDATION
  • ASSAYS & ANNOTATION
  • DISCLAIMER
  • HELP & FAQ
  • PRIVACY STATEMENT
  • LICENCE & CITATION
Fields »
Search result

Field
Term
Gene name
Class
Subclass
Class
Keyword
Chromosome
External id
Tissue
Cell type
Expression
Antibody panel
Tissue
Main location
Patient ID
Annotation
Tissue
Category
Tau score
Cluster
Reliability
Brain region
Category
Tau score
Brain region
Category
Tau score
Brain region
Category
Tau score
Cluster
Reliability
Tissue
Cell type
Enrichment
Cell type
Category
Tau score
Cell type
Category
Tau score
Cell type
Category
Tau score
Cell lineage
Category
Tau score
Cluster
Cluster
Location
Searches
Location
Cell line
Class
Type
Phase
Reliability
Cancer
Prognosis
Cancer
Category
Cancer
Category
Tau score
Cluster
Variants
Interacting gene (ensg_id)
Type
Number of interactions
Pathway
Category
Score
Score
Score
Validation
Validation
Validation
Validation
Antibodies
Data type
Column


  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • SUBCELL

  • CANCER

  • BLOOD

  • CELL LINE

  • STRUCT & INT

  • DAAM2
BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:147.6 nTPM
HPA Brain:305.9 nTPM
GTEx:147.6 nTPM
FANTOM5:294.1 Scaled Tags Per Million
Pig:179.6 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

305.9
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 263.0
2048 Male, age 55, midline 310.9
1981 Female, age 72, midline 270.2
2816 Male, age 47, midline 251.1
2194 Female, age 79, both hemispheres 244.7
2565 Male, age 75, midline 238.1
Cervical spinal cord, dorsal horn
nTPM: 230.7
2173 Female, age 72, unknown 301.5
2296 Male, age 66, both hemispheres 281.5
1877 Male, age 55, unknown 244.5
2069 Male, age 47, both hemispheres 210.7
2721 Male, age 90, both hemispheres 196.2
2297 Male, age 75, both hemispheres 149.6
Cervical spinal cord, ventral horn
nTPM: 305.9
2809 Male, age 90, both hemispheres 384.1
2295 Male, age 66, both hemispheres 337.1
2480 Male, age 75, both hemispheres 325.6
2098 Female, age 72, unknown 285.2
2068 Male, age 55, unknown 265.6
2820 Female, age 79, both hemispheres 237.9

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

147.6
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 147.6
Samples: 159

Max nTPM: 339.3
Min nTPM: 39.2
Std nTPM: 50.0
Median nTPM: 146.9
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 339.3
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 288.8
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 281.5
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 264.9
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 247.1
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 246.1
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 242.0
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 233.9
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 233.7
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 233.2
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 233.2
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 226.5
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 223.1
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 219.2
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 219.0
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 217.6
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 213.5
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 209.5
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 205.5
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 205.1
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 198.2
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 196.9
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 196.8
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 196.2
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 189.0
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 186.4
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 186.1
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 183.5
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 182.0
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 181.5
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 181.1
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 179.2
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 179.0
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 178.3
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 177.9
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 175.1
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 174.8
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 174.5
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 174.5
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 172.9
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 172.0
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 170.6
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 170.2
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 170.2
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 169.9
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 169.4
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 169.2
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 168.7
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 167.6
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 166.8
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 165.0
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 163.7
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 163.5
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 163.4
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 162.5
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 162.3
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 162.1
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 160.9
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 160.0
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 158.2
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 157.4
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 156.7
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 155.7
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 155.6
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 155.0
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 153.6
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 153.5
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 152.5
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 151.5
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 151.4
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 151.3
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 151.2
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 151.1
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 150.6
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 150.1
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 149.9
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 149.1
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 149.1
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 148.5
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 146.9
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 146.0
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 145.7
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 144.8
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 143.6
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 142.4
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 141.6
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 141.5
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 139.9
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 139.5
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 139.2
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 139.1
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 138.9
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 137.5
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 137.4
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 136.4
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 136.0
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 136.0
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 133.6
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 132.3
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 132.1
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 131.9
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 131.8
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 131.3
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 129.7
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 129.1
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 128.5
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 128.4
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 127.7
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 127.1
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 125.5
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 125.4
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 124.8
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 123.2
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 123.0
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 122.2
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 122.0
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 121.8
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 121.4
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 120.2
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 116.0
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 115.5
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 115.3
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 111.3
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 110.8
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 109.9
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 109.5
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 109.3
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 107.3
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 105.1
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 104.2
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 103.7
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 103.2
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 103.2
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 103.0
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 101.1
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 100.2
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 97.6
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 94.9
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 93.3
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 92.4
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 89.2
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 83.9
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 82.9
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 80.0
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 77.2
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 75.6
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 74.0
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 73.7
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 73.2
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 70.3
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 69.9
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 69.7
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 67.9
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 65.4
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 59.8
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 47.2
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 40.9
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 40.3
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 39.2
Show allShow less

SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

294.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 294.1
FF:10181-103D1 60 years, female 344.4
FF:10159-103A6 76 years, female 243.7

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

179.6
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 157.1
Samples: 4

Max nTPM: 175.2
Min nTPM: 111.4
Sample A Female 170.0
Sample B Female 171.8
Sample C Male 111.4
Sample D Male 175.2
Ventral spinal cord
nTPM: 179.6
Samples: 4

Max nTPM: 200.9
Min nTPM: 149.3
Sample A Female 189.7
Sample B Female 178.5
Sample C Male 149.3
Sample D Male 200.9

Contact

  • NEWS ARTICLES
  • PRESS ROOM

The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS

The Human Protein Atlas

  • DOWNLOADABLE DATA
  • LICENCE & CITATION
  • HELP & FAQ
The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.


contact@proteinatlas.org