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TISSUE PRIMARY DATA AMYGDALA Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Tissue proteome
Amygdala
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:40.1 nTPM
HPA Brain:56.2 nTPM
GTEx:40.1 nTPM
FANTOM5:117.6 Scaled Tags Per Million
Mouse:22.7 nTPM
Allen mouse:0.6 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

56.2
Sample id Sample description nTPM
Amygdala
nTPM: 56.2
2514 Male, age 75, right hemisphere 65.3
1987 Female, age 91, left hemisphere 57.8
2695 Female, age 67, right hemisphere 54.8
2517 Female, age 94, left hemisphere 51.8
2814 Male, age 76, right hemisphere 51.3
Basal amygdala
nTPM: 47.9
2609 Male, age 75, right hemisphere 56.2
2110 Male, age 80, left hemisphere 52.1
2243 Female, age 91, right hemisphere 47.9
2827 Female, age 67, right hemisphere 46.6
2685 Female, age 94, left hemisphere 42.7
1955 Male, age 76, both hemispheres 42.0
Central amygdala
nTPM: 49.1
2239 Male, age 80, left hemisphere 55.1
2515 Male, age 75, right hemisphere 51.1
2701 Female, age 91, right hemisphere 48.2
1905 Male, age 76, both hemispheres 47.4
2826 Female, age 94, left hemisphere 43.8
Corticomedial amygdala
nTPM: 50.0
2428 Male, age 75, right hemisphere 54.0
2242 Female, age 91, right hemisphere 51.7
2535 Female, age 67, right hemisphere 51.3
2429 Female, age 94, left hemisphere 48.3
2829 Male, age 80, left hemisphere 47.5
2240 Male, age 76, both hemispheres 46.9
Lateral amygdala
nTPM: 50.2
2516 Male, age 75, right hemisphere 58.1
2830 Female, age 67, right hemisphere 55.1
2534 Female, age 94, left hemisphere 49.5
2255 Female, age 91, right hemisphere 49.1
1883 Male, age 76, both hemispheres 45.2
2256 Male, age 80, left hemisphere 44.2

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

40.1
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 40.1
Samples: 152

Max nTPM: 65.3
Min nTPM: 20.6
Std nTPM: 7.3
Median nTPM: 39.8
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 65.3
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 63.9
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 60.2
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 57.8
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 54.6
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 53.3
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 53.0
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 51.9
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 51.4
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 51.3
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 51.0
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 50.9
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 50.7
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 50.3
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 50.1
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 49.2
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 48.8
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 48.7
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 48.0
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 47.8
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 47.7
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 47.7
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 47.7
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 47.6
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 47.5
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 47.5
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 47.0
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 46.9
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 46.5
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 45.8
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 45.7
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 45.6
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 45.4
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 45.2
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 45.1
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 45.0
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 45.0
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 44.6
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 44.2
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 43.8
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 43.5
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 43.5
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 43.3
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 43.2
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 43.0
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 42.9
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 42.6
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 42.6
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 42.2
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 41.9
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 41.9
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 41.9
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 41.7
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 41.7
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 41.7
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 41.7
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 41.6
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 41.6
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 41.5
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 41.4
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 41.4
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 41.3
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 41.2
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 41.1
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 41.0
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 41.0
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 41.0
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 40.7
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 40.7
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 40.5
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 40.5
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 40.3
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 40.2
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 40.0
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 39.9
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 39.9
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 39.8
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 39.6
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 39.6
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 39.5
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 39.3
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 39.0
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 38.9
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 38.6
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 38.6
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 38.5
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 38.4
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 38.3
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 38.2
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 38.2
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 38.1
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 38.1
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 38.0
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 37.9
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 37.9
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 37.8
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 37.6
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 37.3
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 37.2
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 37.2
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 37.0
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 37.0
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 36.8
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 36.7
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 36.5
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 36.5
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 36.4
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 36.2
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 36.1
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 36.1
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 35.8
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 35.6
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 35.2
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 35.1
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 35.0
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 34.7
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 34.5
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 34.5
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 34.2
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 34.1
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 34.0
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 33.8
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 33.8
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 33.7
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 33.6
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 33.5
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 33.5
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 33.5
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 33.4
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 33.1
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 33.0
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 33.0
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 33.0
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 33.0
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 32.8
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 32.7
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 32.6
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 30.8
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 30.6
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 30.3
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 30.0
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 29.9
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 29.9
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 28.9
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 28.9
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 28.5
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 28.1
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 28.0
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 26.6
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 26.2
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 26.0
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 20.6
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

117.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 117.6
FF:10151-102I7 76 years, female 117.6

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

22.7
Mouse sample Sample description nTPM
Amygdala
nTPM: 22.8
Samples: 4

Max nTPM: 25.3
Min nTPM: 20.4
Sample A Male 22.2
Sample B Male 25.3
Sample C Female 20.4
Sample D Female 23.1

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

0.6
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 0.6
75043154 Antisense, RP_060412_05_B05, Mouse strain C57BL/6J (56 days, male) 1.2
71724660 Antisense, RP_050921_01_D06, Mouse strain C57BL/6J (56 days, male) 0.0

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