We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
RBMX
HPA
RESOURCES
  • TISSUE
  • BRAIN
  • SINGLE CELL
  • SUBCELLULAR
  • CANCER
  • BLOOD
  • CELL LINE
  • STRUCTURE & INTERACTION
ABOUT
  • INTRODUCTION
  • HISTORY
  • ORGANIZATION
  • PUBLICATIONS
  • ANTIBODY SUBMISSION
  • ANTIBODY AVAILABILITY
  • ACKNOWLEDGMENTS
  • CONTACT
NEWS
  • NEWS ARTICLES
  • PRESS ROOM
LEARN
  • DICTIONARY
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
  • METHODS
  • EDUCATIONAL VIDEOS
DATA
  • DOWNLOADABLE DATA
  • PUBLICATION DATA
  • RELEASE HISTORY
HELP
  • ANTIBODY VALIDATION
  • ASSAYS & ANNOTATION
  • DISCLAIMER
  • HELP & FAQ
  • PRIVACY STATEMENT
  • LICENCE & CITATION
Fields »
Search result

Field
Term
Gene name
Class
Subclass
Class
Keyword
Chromosome
External id
Tissue
Cell type
Expression
Antibody panel
Tissue
Main location
Patient ID
Annotation
Tissue
Category
Tau score
Cluster
Reliability
Brain region
Category
Tau score
Brain region
Category
Tau score
Brain region
Category
Tau score
Cluster
Reliability
Tissue
Cell type
Enrichment
Cell type
Category
Tau score
Cell type
Category
Tau score
Cell type
Category
Tau score
Cell lineage
Category
Tau score
Cluster
Cluster
Location
Searches
Location
Cell line
Class
Type
Phase
Reliability
Cancer
Prognosis
Cancer
Category
Cancer
Category
Tau score
Cluster
Variants
Interacting gene (ensg_id)
Type
Number of interactions
Pathway
Category
Score
Score
Score
Validation
Validation
Validation
Validation
Antibodies
Data type
Column


  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • SUBCELL

  • CANCER

  • BLOOD

  • CELL LINE

  • STRUCT & INT

  • RBMX
TISSUE PRIMARY DATA VAGINA Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Vagina
Tissue proteome
Vagina
VAGINA - Expression summary
Protein expression
Vaginai

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Squamous epithelial cells: High
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:75.4 nTPM
GTEx:75.4 nTPM
FANTOM5:108.9 Scaled Tags Per Million

VAGINA - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA057707
Squamous epithelial cells High

VAGINA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

75.4
GTEx sample id Sample description nTPM
Vagina
Average nTPM: 75.4
Samples: 156

Max nTPM: 126.0
Min nTPM: 46.3
Std nTPM: 14.3
Median nTPM: 73.5
GTEX-1F48J-2526-SM-7P8TU 50-59 years, female 126.0
GTEX-11GSP-2226-SM-5HL5Q 60-69 years, female 122.0
GTEX-ZE7O-2426-SM-57WD7 50-59 years, female 116.3
GTEX-13OVI-0926-SM-5J1MI 60-69 years, female 116.2
GTEX-12ZZX-1926-SM-5EGKC 40-49 years, female 106.7
GTEX-ZAK1-2426-SM-EXOHM 50-59 years, female 105.2
GTEX-YFC4-2926-SM-5IFJ8 40-49 years, female 104.9
GTEX-NPJ7-2526-SM-EV79A 60-69 years, female 104.1
GTEX-12WSD-2926-SM-5LZUH 60-69 years, female 103.6
GTEX-S4UY-1326-SM-4AD4X 40-49 years, female 102.6
GTEX-1I4MK-1726-SM-ARL7O 50-59 years, female 98.2
GTEX-P4PP-2526-SM-3P61P 30-39 years, female 96.3
GTEX-14PJM-2926-SM-69LOE 50-59 years, female 94.1
GTEX-13U4I-2026-SM-5LU3L 40-49 years, female 93.8
GTEX-SN8G-2626-SM-EXUQT 50-59 years, female 93.6
GTEX-131YS-2426-SM-5J2OD 60-69 years, female 92.5
GTEX-147F3-1526-SM-5SIAK 50-59 years, female 92.2
GTEX-1F5PL-1826-SM-7P8PP 40-49 years, female 91.8
GTEX-1QCLZ-2226-SM-DTX7R 60-69 years, female 90.8
GTEX-15UF6-2126-SM-6M46Z 70-79 years, female 90.6
GTEX-TSE9-2526-SM-4DXUS 60-69 years, female 90.3
GTEX-1LGRB-2126-SM-COH48 50-59 years, female 89.8
GTEX-15DYW-2926-SM-6PANA 60-69 years, female 89.7
GTEX-W5WG-1026-SM-4LMIF 50-59 years, female 89.0
GTEX-WYVS-1426-SM-4ONCV 40-49 years, female 88.8
GTEX-13W3W-2326-SM-5LU4Y 60-69 years, female 88.5
GTEX-1LH75-1726-SM-DHXKZ 50-59 years, female 88.5
GTEX-PLZ4-2726-SM-3P61A 50-59 years, female 88.1
GTEX-13D11-1326-SM-5IJFY 50-59 years, female 87.8
GTEX-13N11-1526-SM-5L3FL 50-59 years, female 86.3
GTEX-183WM-2126-SM-7LG4I 70-79 years, female 85.8
GTEX-OHPL-2526-SM-3MJGT 60-69 years, female 85.4
GTEX-ZVT3-2726-SM-5GU5X 60-69 years, female 84.9
GTEX-13QIC-1826-SM-5J1MY 60-69 years, female 84.6
GTEX-15SB6-1426-SM-7KUEM 50-59 years, female 84.6
GTEX-X15G-1926-SM-4PQZQ 50-59 years, female 84.0
GTEX-1GN1W-1526-SM-7P8TG 50-59 years, female 83.8
GTEX-1GMR8-2526-SM-7RHI9 50-59 years, female 83.6
GTEX-145LS-2526-SM-5TDC9 60-69 years, female 83.4
GTEX-ZV6S-1326-SM-59HJA 40-49 years, female 83.4
GTEX-1QP28-1426-SM-EVR4E 50-59 years, female 82.8
GTEX-1I1GT-1226-SM-B2LVK 60-69 years, female 82.1
GTEX-17JCI-2526-SM-7DHLB 60-69 years, female 81.9
GTEX-ZXES-0626-SM-5E45P 30-39 years, female 81.9
GTEX-1HCU6-2326-SM-ACKXP 60-69 years, female 81.7
GTEX-UJHI-1326-SM-4IHJO 50-59 years, female 81.3
GTEX-1HCU8-2026-SM-9YFLE 60-69 years, female 81.3
GTEX-RWS6-1726-SM-47JXP 60-69 years, female 81.2
GTEX-18A7A-2826-SM-7LT8J 50-59 years, female 81.1
GTEX-1HFI7-1126-SM-A96S5 50-59 years, female 80.8
GTEX-18D9A-1026-SM-7KFRU 30-39 years, female 80.4
GTEX-1JN76-1526-SM-CNPPF 20-29 years, female 79.9
GTEX-1EWIQ-2326-SM-7IGNF 70-79 years, female 79.5
GTEX-QDT8-2526-SM-48TYX 30-39 years, female 79.2
GTEX-1R9JW-1426-SM-DTX9K 30-39 years, female 78.9
GTEX-1ICG6-1626-SM-ARL81 70-79 years, female 78.6
GTEX-146FH-2626-SM-5Q5E1 50-59 years, female 78.5
GTEX-ZYY3-2626-SM-5N9DH 60-69 years, female 78.3
GTEX-15SHU-2926-SM-7KUKT 40-49 years, female 78.0
GTEX-1LGOU-1126-SM-D3LAI 20-29 years, female 77.1
GTEX-1NUQO-1826-SM-E6CQU 20-29 years, female 76.5
GTEX-14PN3-1626-SM-6AJAV 60-69 years, female 76.4
GTEX-QCQG-1226-SM-48U23 50-59 years, female 76.0
GTEX-14DAQ-2326-SM-5S2QX 60-69 years, female 75.8
GTEX-OHPN-2426-SM-E9TI5 60-69 years, female 75.8
GTEX-ZTPG-2226-SM-57WF9 20-29 years, female 75.3
GTEX-11EM3-1826-SM-5A5KO 20-29 years, female 75.2
GTEX-14PKU-1326-SM-6871B 40-49 years, female 75.2
GTEX-11P81-2126-SM-5HL6N 30-39 years, female 74.8
GTEX-T2IS-1926-SM-4DM74 20-29 years, female 74.8
GTEX-13PVR-1426-SM-5S2PW 60-69 years, female 74.5
GTEX-PX3G-2526-SM-48TZV 20-29 years, female 74.5
GTEX-1117F-2526-SM-5GZY6 60-69 years, female 74.2
GTEX-1IE54-2626-SM-CMKFY 40-49 years, female 74.1
GTEX-XUW1-0326-SM-4BOOR 50-59 years, female 74.0
GTEX-11DXX-1726-SM-5H11T 60-69 years, female 73.5
GTEX-Y114-1926-SM-4TT8J 50-59 years, female 73.5
GTEX-YJ8O-1226-SM-5P9JE 40-49 years, female 73.5
GTEX-ZZPU-2226-SM-5EGIV 50-59 years, female 73.4
GTEX-14H4A-2426-SM-664OQ 40-49 years, female 73.3
GTEX-1IDJU-1026-SM-AHZ2U 60-69 years, female 73.2
GTEX-1HCUA-1026-SM-A9SMI 50-59 years, female 72.9
GTEX-16NPV-2526-SM-6M483 50-59 years, female 72.8
GTEX-1J1OQ-1826-SM-CL53R 40-49 years, female 72.7
GTEX-ZYVF-0326-SM-5GIES 50-59 years, female 72.3
GTEX-Y3IK-2226-SM-4YCD4 50-59 years, female 72.2
GTEX-ZQG8-1126-SM-51MRL 60-69 years, female 71.9
GTEX-1GN1U-2426-SM-9KNTU 50-59 years, female 71.8
GTEX-1MCYP-1326-SM-EV7AD 20-29 years, female 71.8
GTEX-1399U-1526-SM-5J2N7 50-59 years, female 71.6
GTEX-ZP4G-0826-SM-4WWF3 20-29 years, female 71.5
GTEX-WEY5-0826-SM-4LMIH 40-49 years, female 71.3
GTEX-QVJO-2526-SM-CYPRA 60-69 years, female 71.2
GTEX-17F9Y-2326-SM-7DUFP 70-79 years, female 71.1
GTEX-ZGAY-2226-SM-4YCCX 40-49 years, female 70.9
GTEX-Q734-1426-SM-DTXFX 40-49 years, female 70.8
GTEX-11VI4-0726-SM-5GU5B 40-49 years, female 70.7
GTEX-OHPK-2526-SM-3MJH9 50-59 years, female 70.6
GTEX-1MCC2-1126-SM-EVYD6 30-39 years, female 70.5
GTEX-13PL7-2726-SM-5L3GB 60-69 years, female 70.0
GTEX-1S5ZU-2626-SM-E9TII 20-29 years, female 69.7
GTEX-S341-1226-SM-4AD5S 40-49 years, female 69.6
GTEX-ZC5H-2226-SM-4WAWS 40-49 years, female 69.6
GTEX-N7MT-1926-SM-3LK5N 60-69 years, female 69.4
GTEX-11EMC-1926-SM-5A5JU 60-69 years, female 69.3
GTEX-146FR-2426-SM-5NQAU 60-69 years, female 69.3
GTEX-14AS3-1726-SM-5RQJV 40-49 years, female 69.2
GTEX-S7SF-1426-SM-4AT5A 20-29 years, female 69.2
GTEX-TMMY-1926-SM-4DXUU 40-49 years, female 69.2
GTEX-11TTK-2726-SM-5GU58 60-69 years, female 69.1
GTEX-ZVT2-0626-SM-5GICR 50-59 years, female 68.7
GTEX-XUZC-1226-SM-4BRVJ 30-39 years, female 68.6
GTEX-P78B-2226-SM-3P5ZZ 40-49 years, female 68.2
GTEX-TML8-1126-SM-4DXSS 40-49 years, female 68.0
GTEX-1LVAM-1926-SM-E6CIM 50-59 years, female 68.0
GTEX-14PJ6-1626-SM-6872D 60-69 years, female 67.5
GTEX-145ME-1426-SM-5RQJS 40-49 years, female 67.3
GTEX-1JN1M-2326-SM-ARZNG 60-69 years, female 67.3
GTEX-1QPFJ-1626-SM-DTX7X 30-39 years, female 67.2
GTEX-11XUK-1326-SM-5EQM4 40-49 years, female 65.8
GTEX-PWCY-1726-SM-48TD3 20-29 years, female 65.3
GTEX-15SDE-1726-SM-6LPJS 50-59 years, female 65.1
GTEX-1399S-2326-SM-5K7YV 30-39 years, female 64.9
GTEX-1GF9U-1926-SM-7P8TZ 40-49 years, female 62.6
GTEX-1PIEJ-1926-SM-EVYB7 20-29 years, female 61.8
GTEX-1CAMS-2326-SM-793CR 40-49 years, female 61.7
GTEX-T6MO-1226-SM-4DM5S 40-49 years, female 61.6
GTEX-WRHU-2926-SM-4MVNQ 50-59 years, female 61.5
GTEX-ZLWG-1126-SM-4WWFQ 50-59 years, female 61.5
GTEX-Y8LW-1426-SM-5RQJJ 50-59 years, female 61.4
GTEX-131XG-2126-SM-5DUXG 50-59 years, female 61.2
GTEX-1A8FM-2426-SM-7IGPE 50-59 years, female 61.2
GTEX-11I78-2026-SM-5987C 50-59 years, female 60.5
GTEX-16NGA-1626-SM-72D6M 40-49 years, female 60.5
GTEX-RU1J-1426-SM-46MUV 20-29 years, female 60.3
GTEX-SE5C-1126-SM-4BRWZ 40-49 years, female 59.8
GTEX-12WSJ-1326-SM-5GCOB 40-49 years, female 59.7
GTEX-113JC-1926-SM-5N9GE 50-59 years, female 59.4
GTEX-X8HC-2826-SM-46MWJ 50-59 years, female 59.2
GTEX-14BMU-1926-SM-5S2QC 20-29 years, female 59.1
GTEX-PWN1-2526-SM-48TDS 40-49 years, female 58.8
GTEX-S4P3-1126-SM-4AD52 50-59 years, female 58.2
GTEX-U3ZN-0926-SM-4DXTU 30-39 years, female 58.2
GTEX-14JG6-0726-SM-69LQH 30-39 years, female 58.1
GTEX-XV7Q-1626-SM-4BRWC 40-49 years, female 58.1
GTEX-1LNCM-1026-SM-E9U5D 50-59 years, female 56.6
GTEX-1HBPH-2926-SM-9WPNX 40-49 years, female 55.9
GTEX-1LVAN-1626-SM-CNPQ7 50-59 years, female 53.8
GTEX-14A5I-2726-SM-5SIB3 50-59 years, female 53.7
GTEX-15ER7-2526-SM-7KUFW 20-29 years, female 53.7
GTEX-1C475-0526-SM-793AC 40-49 years, female 53.0
GTEX-13QBU-1726-SM-5IJFQ 40-49 years, female 52.4
GTEX-1J8EW-2526-SM-CKZO2 60-69 years, female 52.4
GTEX-1HBPM-2726-SM-9WYUA 60-69 years, female 48.5
GTEX-1JMQL-2326-SM-CNNPV 50-59 years, female 48.3
GTEX-1AMFI-1526-SM-73KVY 50-59 years, female 46.3
Show allShow less

VAGINA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

108.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Vagina
Scaled Tags Per Million: 108.9
FF:10204-103F6 68 years, female 108.9

Contact

  • NEWS ARTICLES
  • PRESS ROOM

The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS

The Human Protein Atlas

  • DOWNLOADABLE DATA
  • LICENCE & CITATION
  • HELP & FAQ
The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.


contact@proteinatlas.org