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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:1411.6 nTPM
HPA Brain:498.0 nTPM
GTEx:1411.6 nTPM
FANTOM5:39.4 Scaled Tags Per Million

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

498.0
Sample id Sample description nTPM
Amygdala
nTPM: 493.4
2695 Female, age 67, right hemisphere 585.6
2514 Male, age 75, right hemisphere 556.6
1987 Female, age 91, left hemisphere 484.4
2517 Female, age 94, left hemisphere 451.8
2814 Male, age 76, right hemisphere 388.8
Basal amygdala
nTPM: 391.8
2827 Female, age 67, right hemisphere 559.7
2609 Male, age 75, right hemisphere 441.3
2110 Male, age 80, left hemisphere 382.1
2685 Female, age 94, left hemisphere 357.7
1955 Male, age 76, both hemispheres 318.9
2243 Female, age 91, right hemisphere 291.1
Central amygdala
nTPM: 466.7
2826 Female, age 94, left hemisphere 828.6
2515 Male, age 75, right hemisphere 554.8
1905 Male, age 76, both hemispheres 350.9
2239 Male, age 80, left hemisphere 310.8
2701 Female, age 91, right hemisphere 288.5
Corticomedial amygdala
nTPM: 352.0
2428 Male, age 75, right hemisphere 492.5
2535 Female, age 67, right hemisphere 388.7
2829 Male, age 80, left hemisphere 340.8
2429 Female, age 94, left hemisphere 321.8
2240 Male, age 76, both hemispheres 286.4
2242 Female, age 91, right hemisphere 281.9
Lateral amygdala
nTPM: 498.0
2830 Female, age 67, right hemisphere 753.3
2516 Male, age 75, right hemisphere 614.9
2534 Female, age 94, left hemisphere 564.8
2256 Male, age 80, left hemisphere 393.4
1883 Male, age 76, both hemispheres 350.5
2255 Female, age 91, right hemisphere 310.9

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1411.6
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 1411.6
Samples: 152

Max nTPM: 3556.3
Min nTPM: 710.6
Std nTPM: 506.8
Median nTPM: 1285.7
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 3556.3
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 3261.8
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 3043.0
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 3004.3
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 2731.7
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 2598.1
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 2556.9
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 2518.3
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 2457.3
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 2391.6
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 2291.8
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 2277.2
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 2183.1
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 2170.7
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 2124.9
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 2053.1
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 2041.3
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 2002.8
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 1926.6
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 1884.4
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 1839.7
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 1835.3
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 1821.7
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 1816.6
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 1815.6
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 1810.5
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 1797.4
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 1796.2
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 1756.6
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 1745.2
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 1744.6
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 1700.0
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 1697.6
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 1636.0
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 1608.1
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 1581.8
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 1572.9
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 1572.7
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 1566.5
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 1563.6
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 1561.8
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 1530.3
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 1498.6
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 1495.9
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 1487.5
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 1486.8
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 1484.8
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 1484.4
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 1483.3
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 1479.7
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 1470.5
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 1446.4
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 1442.4
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 1439.7
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 1414.6
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 1414.3
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 1396.8
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 1395.5
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 1394.4
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 1382.6
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 1375.0
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 1371.9
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 1370.9
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 1367.2
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 1352.1
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 1341.1
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 1340.7
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 1337.2
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 1337.0
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 1332.6
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 1332.2
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 1314.9
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 1314.7
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 1314.1
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 1307.1
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 1297.7
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 1273.6
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 1267.7
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 1265.0
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 1262.3
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 1256.7
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 1252.1
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 1239.5
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 1237.8
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 1235.3
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 1234.9
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 1220.1
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 1220.1
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 1216.7
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 1215.9
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 1215.4
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 1213.8
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 1212.3
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 1212.1
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 1207.0
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 1201.5
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 1183.3
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 1178.8
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 1174.8
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 1170.0
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 1162.8
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 1158.2
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 1157.0
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 1136.5
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 1135.9
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 1131.3
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 1130.2
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 1127.4
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 1122.7
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 1112.0
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 1108.6
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 1093.3
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 1082.2
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 1078.3
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 1073.9
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 1065.8
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 1051.1
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 1044.2
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 1042.0
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 1034.8
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 1025.5
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 1019.5
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 995.9
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 994.6
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 992.8
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 987.3
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 981.7
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 976.9
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 971.8
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 971.2
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 967.2
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 967.0
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 966.4
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 963.7
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 961.6
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 948.6
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 937.4
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 934.6
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 934.1
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 914.4
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 891.0
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 885.0
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 862.2
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 856.2
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 835.3
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 824.4
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 814.0
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 807.1
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 790.6
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 758.4
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 748.8
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 710.6
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

39.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 39.4
FF:10151-102I7 76 years, female 39.4

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