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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
Brain proteome
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:386.6 nTPM
HPA Brain:356.8 nTPM
GTEx:386.6 nTPM
FANTOM5:1898.1 Scaled Tags Per Million
Pig:1781.2 nTPM

SPINAL CORD - Annotated protein expression
Pending normal tissue analysis

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

356.8
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 356.8
2048 Male, age 55, midline 640.2
1981 Female, age 72, midline 408.8
2194 Female, age 79, both hemispheres 272.3
2816 Male, age 47, midline 271.3
2565 Male, age 75, midline 191.3
Cervical spinal cord, dorsal horn
nTPM: 308.3
2296 Male, age 66, both hemispheres 414.4
2173 Female, age 72, unknown 376.9
2069 Male, age 47, both hemispheres 370.9
1877 Male, age 55, unknown 320.1
2721 Male, age 90, both hemispheres 245.0
2297 Male, age 75, both hemispheres 122.4
Cervical spinal cord, ventral horn
nTPM: 345.6
2098 Female, age 72, unknown 683.6
2809 Male, age 90, both hemispheres 368.6
2295 Male, age 66, both hemispheres 332.9
2480 Male, age 75, both hemispheres 299.3
2068 Male, age 55, unknown 210.4
2820 Female, age 79, both hemispheres 178.7

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

386.6
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 386.6
Samples: 159

Max nTPM: 854.6
Min nTPM: 103.4
Std nTPM: 145.2
Median nTPM: 359.8
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 854.6
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 807.2
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 750.4
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 744.4
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 655.2
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 654.3
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 653.4
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 647.1
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 644.7
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 621.3
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 621.0
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 615.1
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 606.8
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 602.3
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 597.1
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 589.3
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 577.2
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 574.3
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 572.4
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 571.4
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 555.4
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 543.4
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 542.6
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 539.7
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 537.4
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 534.0
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 524.3
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 517.7
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 517.4
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 516.5
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 514.9
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 512.3
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 509.8
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 501.0
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 499.1
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 494.8
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 494.1
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 490.2
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 485.9
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 485.5
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 482.4
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 480.7
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 480.3
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 478.0
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 477.7
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 476.5
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 472.0
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 468.3
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 461.5
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 461.4
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 461.3
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 458.4
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 454.0
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 452.1
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 451.3
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 450.4
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 445.0
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 439.6
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 433.7
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 432.7
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 423.8
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 420.9
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 419.4
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 415.9
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 414.2
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 413.8
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 408.5
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 404.2
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 401.2
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 393.3
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 391.6
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 385.7
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 379.3
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 377.7
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 373.0
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 365.9
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 365.3
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 363.0
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 363.0
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 359.8
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 358.5
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 350.1
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 343.5
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 342.8
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 342.8
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 339.5
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 337.1
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 335.6
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 333.6
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 333.1
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 332.3
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 332.2
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 330.9
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 328.8
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 325.5
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 324.4
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 321.6
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 321.4
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 320.7
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 315.0
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 312.3
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 312.2
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 309.2
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 307.2
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 307.0
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 305.3
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 304.7
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 303.3
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 303.2
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 296.3
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 296.0
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 294.7
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 294.4
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 291.0
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 286.3
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 283.9
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 283.7
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 283.5
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 281.9
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 279.7
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 278.9
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 278.9
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 272.8
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 270.2
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 269.3
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 263.6
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 259.1
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 255.2
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 254.5
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 254.2
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 251.1
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 250.7
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 248.4
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 248.1
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 244.9
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 243.2
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 242.6
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 241.8
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 240.7
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 236.2
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 234.9
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 227.6
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 214.6
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 213.2
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 207.5
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 206.2
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 198.6
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 188.6
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 181.5
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 180.3
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 177.4
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 170.5
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 167.6
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 161.5
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 161.0
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 152.8
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 142.4
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 138.8
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 103.4
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

1898.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 1898.1
FF:10181-103D1 60 years, female 2067.1
FF:10159-103A6 76 years, female 1729.1

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1781.2
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 1781.2
Samples: 4

Max nTPM: 2910.8
Min nTPM: 849.6
Sample A Female 849.6
Sample B Female 2364.8
Sample C Male 2910.8
Sample D Male 999.7
Ventral spinal cord
nTPM: 1400.5
Samples: 4

Max nTPM: 1724.5
Min nTPM: 1035.0
Sample A Female 1297.6
Sample B Female 1035.0
Sample C Male 1544.8
Sample D Male 1724.5

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