BASAL GANGLIA - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:57.3 nTPM
HPA Brain:34.4 nTPM
GTEx:57.3 nTPM
FANTOM5:137.9 Scaled Tags Per Million
Pig:27.5 nTPM
Mouse:66.3 nTPM
Allen mouse:0.3 Expression energy

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max subtype nTPMi 34.4
Sample id Sample description nTPM
Caudate nucleus
nTPM: 29.6
2846 Female, age 79, unknown 36.1
2481 Female, age 94, left hemisphere 34.4
2288 Male, age 75, left hemisphere 33.6
1857 Female, age 85, left hemisphere 29.5
1854 Male, age 80, left hemisphere 29.3
2290 Female, age 72, unknown 29.1
1781 Male, age 74, unknown 25.0
2289 Male, age 61, right hemisphere 19.4
Globus pallidus, externus
nTPM: 25.0
2772 Female, age 79, unknown 39.2
1996 Male, age 80, right hemisphere 28.7
2395 Male, age 75, both hemispheres 28.2
2567 Female, age 72, unknown 15.8
2646 Male, age 61, right hemisphere 13.1
Globus pallidus, internus
nTPM: 27.2
2287 Male, age 75, right hemisphere 37.2
1818 Male, age 74, unknown 32.7
2778 Female, age 91, both hemispheres 31.4
2483 Female, age 94, right hemisphere 27.4
2037 Male, age 80, right hemisphere 26.2
2111 Female, age 85, right hemisphere 18.3
2566 Female, age 72, unknown 17.4
Nucleus accumbens
nTPM: 30.2
1856 Female, age 91, right hemisphere 38.1
2391 Female, age 94, left hemisphere 37.7
2286 Male, age 75, left hemisphere 35.5
2698 Female, age 72, unknown 32.6
1806 Female, age 85, left hemisphere 26.5
2824 Male, age 61, right hemisphere 26.5
1783 Male, age 74, unknown 25.1
2732 Male, age 80, right hemisphere 19.9
Nucleus basalis of Meynert
nTPM: 26.0
2821 Male, age 75, both hemispheres 35.8
2393 Male, age 80, right hemisphere 27.3
2484 Female, age 94, left hemisphere 25.1
2569 Male, age 61, both hemispheres 16.0
Nucleus of the diagonal band
nTPM: 34.4
1812 Female, age 91, both hemispheres 46.1
2775 Male, age 80, right hemisphere 37.2
2195 Female, age 85, both hemispheres 34.3
2029 Male, age 61, right hemisphere 30.1
1979 Male, age 74, unknown 24.3
Putamen
nTPM: 27.0
1937 Female, age 91, right hemisphere 33.9
2482 Female, age 94, left hemisphere 32.2
1838 Male, age 80, right hemisphere 28.6
2466 Female, age 79, unknown 28.6
1829 Male, age 74, unknown 27.7
2647 Male, age 75, left hemisphere 22.2
2489 Female, age 72, unknown 15.4
Septal nuclei
nTPM: 28.5
2031 Female, age 72, unknown 40.6
2009 Female, age 91, both hemispheres 33.8
1960 Male, age 74, unknown 32.0
2629 Female, age 94, right hemisphere 31.0
2199 Male, age 80, right hemisphere 24.2
2394 Male, age 61, left hemisphere 21.0
2059 Female, age 85, both hemispheres 16.6
Stria terminalis, bed nucleus
nTPM: 27.1
1974 Female, age 91, both hemispheres 34.5
2201 Male, age 74, unknown 23.5
2486 Female, age 94, both hemispheres 23.4

BASAL GANGLIA - GTEx RNA-seqi
Max subtype nTPMi 57.3
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 53.5
Samples: 246

Max nTPM: 138.2
Min nTPM: 23.6
Std nTPM: 13.9
Median nTPM: 50.4
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 138.2
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 125.3
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 120.3
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 113.5
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 104.6
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 103.1
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 90.6
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 85.7
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 84.2
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 79.0
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 77.5
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 57.3
Samples: 246

Max nTPM: 122.2
Min nTPM: 27.7
Std nTPM: 11.9
Median nTPM: 54.8
GTEX-147F4-0011-R6b-SM-5S2UP 50-59 years, male 122.2
GTEX-1LVAO-0011-R6b-SM-EZ6MX 60-69 years, male 121.2
GTEX-1EKGG-0011-R6a-SM-CL538 60-69 years, male 104.8
GTEX-14753-0011-R6b-SM-5S2UD 60-69 years, male 97.0
GTEX-12WSD-0011-R6b-SM-5P9JU 60-69 years, female 85.1
GTEX-11DYG-0011-R6a-SM-DO936 60-69 years, male 84.8
GTEX-1C6WA-0011-R6a-SM-7PBYP 60-69 years, male 83.2
GTEX-11DZ1-0011-R6b-SM-DNZZG 50-59 years, male 82.8
GTEX-12WSF-0011-R6b-SM-5HL8W 70-79 years, male 82.2
GTEX-12ZZZ-0011-R6b-SM-5EQ5B 60-69 years, male 81.1
GTEX-11NV4-0011-R6a-SM-57WD5 60-69 years, male 80.2
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Brain - Putamen (basal ganglia)
Average nTPM: 54.8
Samples: 205

Max nTPM: 113.3
Min nTPM: 22.6
Std nTPM: 10.5
Median nTPM: 53.2
GTEX-13CF2-0011-R7b-SM-5K7UV 60-69 years, male 113.3
GTEX-Z93S-0011-R7b-SM-4RGNK 50-59 years, male 92.2
GTEX-14E7W-0011-R7b-SM-5ZZV4 70-79 years, male 90.9
GTEX-16YQH-0011-R7a-SM-79ON1 30-39 years, male 84.9
GTEX-1ICLZ-0011-R7a-SM-ARZLU 60-69 years, male 79.6
GTEX-1C6WA-0011-R7b-SM-7P8S8 60-69 years, male 78.7
GTEX-12WSI-0011-R7b-SM-5GU78 50-59 years, male 75.4
GTEX-11DZ1-0011-R7a-SM-DNZZH 50-59 years, male 74.9
GTEX-1EKGG-0011-R7a-SM-CKZNN 60-69 years, male 73.8
GTEX-1LVA9-0011-R7a-SM-EYYWG 50-59 years, male 72.5
GTEX-1HFI6-0011-R7b-SM-CM2SS 40-49 years, male 72.3
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BASAL GANGLIA - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 137.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 81.0
FF:10164-103B2 76 years, female 81.0
Nucleus accumbens
Scaled Tags Per Million: 137.9
FF:10037-101F1 23-56 years, mixed 137.9
Putamen
Scaled Tags Per Million: 112.5
FF:10176-103C5 60 years, female 112.5
Globus pallidus
Scaled Tags Per Million: 95.9
FF:10175-103C4 60 years, female 116.1
FF:10161-103A8 76 years, female 75.7

BASAL GANGLIA - Pig RNA-seqi
Max subtype nTPMi 27.5
Pig sample Sample description nTPM
Caudate
nTPM: 27.5
Samples: 4

Max nTPM: 31.1
Min nTPM: 24.2
Sample A Female 31.1
Sample B Female 24.2
Sample C Male 26.6
Sample D Male 28.2
Putamen
nTPM: 25.1
Samples: 4

Max nTPM: 28.7
Min nTPM: 22.9
Sample A Female 23.7
Sample B Female 28.7
Sample C Male 22.9
Sample D Male 25.0
Septum
nTPM: 27.3
Samples: 4

Max nTPM: 28.7
Min nTPM: 24.7
Sample A Female 28.0
Sample B Female 27.6
Sample C Male 24.7
Sample D Male 28.7
Ventral pallidum
nTPM: 27.3
Samples: 4

Max nTPM: 34.4
Min nTPM: 23.7
Sample A Female 34.4
Sample B Female 25.1
Sample C Male 23.7
Sample D Male 25.9

BASAL GANGLIA - Mouse RNA-seqi
Max subtype nTPMi 66.3
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 56.4
Samples: 4

Max nTPM: 61.1
Min nTPM: 51.9
Sample A Male 60.7
Sample B Male 51.9
Sample C Female 61.1
Sample D Female 52.0
Septum
nTPM: 66.3
Samples: 4

Max nTPM: 69.5
Min nTPM: 63.3
Sample A Male 63.3
Sample B Male 69.5
Sample C Female 64.3
Sample D Female 68.1
Ventral forebrain
nTPM: 52.2
Samples: 4

Max nTPM: 58.5
Min nTPM: 48.4
Sample A Male 48.4
Sample B Male 49.3
Sample C Female 58.5
Sample D Female 52.5

BASAL GANGLIA - Allen Mouse ISHi
Max subtype Expression energyi 0.3
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.3
75198106 Antisense, RP_060502_02_A01, Mouse strain C57BL/6J (56 days, male) 0.3
Pallidum
Expression energy: 0.1
75198106 Antisense, RP_060502_02_A01, Mouse strain C57BL/6J (56 days, male) 0.1

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