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TISSUE SPINAL CORD Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
Dictionary
Tissue proteome
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:66.6 nTPM
HPA Brain:38.0 nTPM
GTEx:66.6 nTPM
FANTOM5:112.9 Scaled Tags Per Million
Pig:18.8 nTPM

SPINAL CORD - Annotated protein expression
Pending normal tissue analysis

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

38.0
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 31.4
1981 Female, age 72, midline 40.5
2048 Male, age 55, midline 34.5
2194 Female, age 79, both hemispheres 28.4
2565 Male, age 75, midline 27.5
2816 Male, age 47, midline 25.9
Cervical spinal cord, dorsal horn
nTPM: 38.0
2173 Female, age 72, unknown 49.1
2296 Male, age 66, both hemispheres 41.7
2069 Male, age 47, both hemispheres 39.8
2297 Male, age 75, both hemispheres 35.7
1877 Male, age 55, unknown 32.3
2721 Male, age 90, both hemispheres 29.4
Cervical spinal cord, ventral horn
nTPM: 33.7
2098 Female, age 72, unknown 41.9
2480 Male, age 75, both hemispheres 37.8
2809 Male, age 90, both hemispheres 32.9
2295 Male, age 66, both hemispheres 32.5
2068 Male, age 55, unknown 31.3
2820 Female, age 79, both hemispheres 25.6

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

66.6
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 66.6
Samples: 159

Max nTPM: 108.7
Min nTPM: 35.6
Std nTPM: 12.9
Median nTPM: 65.0
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 108.7
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 104.0
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 100.3
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 95.9
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 95.7
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 95.5
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 94.9
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 94.8
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 91.5
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 89.2
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 88.4
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 87.4
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 85.5
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 85.0
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 85.0
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 84.6
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 84.4
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 81.2
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 80.7
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 80.0
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 79.9
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 78.7
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 78.3
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 78.3
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 77.8
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 77.6
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 77.1
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 77.0
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 77.0
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 76.8
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 76.4
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 76.2
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 75.9
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 75.8
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 75.8
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 75.1
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 75.0
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 74.8
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 73.7
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 73.5
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 73.3
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 72.8
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 72.7
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 72.6
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 72.5
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 72.5
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 72.3
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 72.3
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 72.2
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 71.8
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 71.7
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 71.6
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 71.6
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 71.5
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 70.9
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 70.7
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 70.6
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 70.5
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 70.3
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 70.2
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 70.0
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 70.0
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 69.8
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 69.5
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 69.5
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 69.1
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 68.8
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 68.5
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 68.4
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 68.1
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 67.5
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 67.4
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 67.3
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 67.3
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 67.0
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 66.6
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 66.1
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 65.7
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 65.2
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 65.0
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 65.0
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 64.8
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 64.7
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 64.6
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 64.1
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 64.0
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 64.0
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 63.8
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 63.6
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 63.1
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 63.0
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 62.7
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 62.7
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 62.3
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 62.1
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 62.0
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 61.9
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 61.6
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 61.5
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 61.3
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 61.0
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 61.0
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 60.8
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 60.6
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 60.4
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 60.3
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 60.0
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 59.7
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 59.6
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 59.0
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 58.8
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 58.7
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 58.6
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 58.2
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 58.1
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 58.1
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 57.8
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 57.7
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 57.7
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 57.5
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 57.3
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 57.0
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 56.5
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 56.3
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 56.1
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 55.9
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 55.9
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 55.8
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 55.6
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 55.5
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 55.4
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 55.2
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 55.1
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 54.9
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 54.9
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 54.7
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 54.6
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 54.3
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 54.3
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 53.8
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 53.8
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 53.2
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 52.7
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 52.7
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 51.8
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 51.5
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 51.0
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 48.9
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 48.3
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 48.0
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 47.5
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 47.2
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 47.1
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 46.3
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 46.0
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 42.0
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 41.8
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 40.8
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 35.6
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

112.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 112.9
FF:10181-103D1 60 years, female 120.0
FF:10159-103A6 76 years, female 105.9

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

18.8
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 18.0
Samples: 4

Max nTPM: 20.5
Min nTPM: 12.6
Sample A Female 20.5
Sample B Female 18.3
Sample C Male 12.6
Sample D Male 20.5
Ventral spinal cord
nTPM: 18.8
Samples: 4

Max nTPM: 19.7
Min nTPM: 17.1
Sample A Female 19.7
Sample B Female 18.7
Sample C Male 17.1
Sample D Male 19.5

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