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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
HPA Brain:
315.9
nTPM
FANTOM5:
602.0
Scaled Tags Per Million
Pig:
241.7
nTPM
Allen mouse:
8.1
Expression energy
PONS - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
315.9
Sample id
Sample description
nTPM
Anterior cochlear nucleus, ventral nTPM: 173.2
2301
Female, age 85, both hemispheres
204.8
1984
Male, age 76, both hemispheres
200.6
2090
Male, age 80, both hemispheres
164.3
2188
Female, age 91, both hemispheres
123.2
Dorsal cochlear nucleus nTPM: 261.1
2802
Male, age 74, right hemisphere
337.0
2058
Male, age 76, both hemispheres
253.1
2370
Male, age 61, both hemispheres
252.8
2378
Male, age 80, both hemispheres
250.3
2187
Female, age 91, both hemispheres
212.1
Dorsal tegmental nucleus nTPM: 261.4
1936
Male, age 76, left hemisphere
315.1
2083
Male, age 80, both hemispheres
286.8
2326
Male, age 74, both hemispheres
276.8
2358
Male, age 61, both hemispheres
166.8
Dorsolateral tegmental area nTPM: 254.2
2360
Male, age 74, both hemispheres
313.4
2654
Male, age 80, both hemispheres
301.2
2141
Male, age 76, both hemispheres
272.4
2751
Female, age 85, both hemispheres
255.0
2337
Male, age 61, both hemispheres
129.2
Kolliker-Fuse nucleus nTPM: 285.8
2315
Male, age 76, right hemisphere
518.9
2163
Male, age 80, both hemispheres
236.2
2793
Female, age 91, left hemisphere
102.2
Lateral lemniscal nuclei nTPM: 152.5
2169
Male, age 76, both hemispheres
202.7
2746
Female, age 85, left hemisphere
171.4
2036
Male, age 80, both hemispheres
157.6
2453
Male, age 74, right hemisphere
139.1
2320
Female, age 91, left hemisphere
91.6
Lateral parabrachial nucleus nTPM: 248.2
2792
Male, age 76, both hemispheres
323.3
2139
Female, age 85, right hemisphere
312.7
2013
Male, age 80, both hemispheres
237.3
2790
Male, age 61, both hemispheres
119.7
Lateral vestibular nucleus nTPM: 235.3
2311
Male, age 80, both hemispheres
237.1
2184
Male, age 76, both hemispheres
233.4
Locus coeruleus nTPM: 315.9
2317
Female, age 72, unknown
386.8
2788
Male, age 74, unknown
373.1
2014
Male, age 55, unknown
339.7
2123
Female, age 91, both hemispheres
316.6
1980
Male, age 76, both hemispheres
303.6
2162
Male, age 80, both hemispheres
253.2
2720
Male, age 74, both hemispheres
238.0
Medial parabrachial nucleus nTPM: 213.5
2786
Male, age 76, both hemispheres
259.4
2170
Female, age 91, both hemispheres
215.4
2463
Female, age 85, right hemisphere
208.4
2854
Male, age 80, both hemispheres
204.1
2156
Male, age 61, both hemispheres
180.1
Medial periolivary nuclei nTPM: 147.1
2791
Male, age 74, right hemisphere
203.0
2063
Male, age 76, both hemispheres
196.6
2171
Female, age 85, both hemispheres
151.1
2458
Female, age 91, both hemispheres
92.8
2081
Male, age 80, both hemispheres
92.0
Motor facial nucleus nTPM: 155.7
2795
Female, age 91, both hemispheres
230.8
2062
Male, age 76, both hemispheres
218.1
2365
Male, age 74, right hemisphere
158.3
2126
Male, age 61, both hemispheres
149.2
2327
Male, age 80, both hemispheres
90.1
2697
Female, age 85, both hemispheres
87.6
Motor trigeminal nucleus nTPM: 150.7
2309
Male, age 76, both hemispheres
234.9
2335
Male, age 61, both hemispheres
174.8
2079
Male, age 80, both hemispheres
132.0
2560
Male, age 74, both hemispheres
124.3
2321
Female, age 91, both hemispheres
87.4
Nuclei of the trapezoid body nTPM: 156.6
1983
Male, age 76, both hemispheres
202.6
2368
Female, age 91, both hemispheres
162.8
2735
Female, age 85, both hemispheres
157.5
2159
Male, age 61, both hemispheres
148.6
2166
Male, age 80, both hemispheres
111.3
Nucleus raphe magnus nTPM: 143.8
2455
Male, age 74, both hemispheres
198.9
2051
Male, age 76, both hemispheres
184.5
2160
Male, age 61, both hemispheres
163.6
2328
Male, age 80, both hemispheres
133.5
2172
Female, age 85, both hemispheres
92.1
2459
Female, age 91, both hemispheres
90.0
Paramedian reticular nucleus nTPM: 211.9
2052
Male, age 76, both hemispheres
236.4
2057
Male, age 80, both hemispheres
228.5
2313
Male, age 61, both hemispheres
217.9
2050
Female, age 85, both hemispheres
164.6
Pedunculopontine tegmental nucleus nTPM: 278.3
2334
Male, age 80, both hemispheres
336.6
1921
Female, age 85, both hemispheres
311.5
2338
Male, age 61, both hemispheres
186.9
Pontine nuclei nTPM: 120.5
1968
Male, age 76, left hemisphere
179.0
1863
Male, age 55, unknown
154.4
2727
Male, age 61, right hemisphere
122.4
2787
Female, age 85, both hemispheres
121.3
2115
Male, age 80, left hemisphere
112.7
2319
Female, age 91, both hemispheres
105.1
2109
Female, age 72, unknown
100.8
2454
Male, age 74, left hemisphere
68.7
Pontine raphe nucleus nTPM: 237.3
2853
Male, age 76, midline
296.9
2122
Female, age 85, midline
177.7
Posteroventral cochlear nucleus nTPM: 192.7
2070
Male, age 76, both hemispheres
248.7
2752
Female, age 85, both hemispheres
230.4
2371
Male, age 61, both hemispheres
227.8
2341
Male, age 80, both hemispheres
144.2
2135
Female, age 91, both hemispheres
112.3
Principal sensory trigeminal nucleus nTPM: 168.1
2324
Male, age 76, both hemispheres
291.5
2158
Male, age 61, both hemispheres
158.8
2008
Male, age 80, left hemisphere
142.6
2367
Female, age 91, left hemisphere
79.6
Reticular pontine nucleus, caudal nTPM: 136.7
2092
Male, age 76, both hemispheres
226.5
2332
Male, age 80, right hemisphere
108.6
2559
Male, age 74, both hemispheres
108.5
2457
Female, age 91, both hemispheres
103.2
Reticular pontine nucleus, oral nTPM: 192.0
1939
Male, age 80, both hemispheres
305.2
2167
Male, age 76, both hemispheres
260.0
2012
Female, age 85, both hemispheres
218.7
2366
Female, age 91, both hemispheres
112.8
2361
Male, age 74, both hemispheres
63.4
Reticulotegmental nucleus nTPM: 212.2
2325
Male, age 76, both hemispheres
240.9
2333
Male, age 80, both hemispheres
232.1
2322
Female, age 91, both hemispheres
196.5
2452
Male, age 74, both hemispheres
179.4
Spinal trigeminal nucleus, oral nTPM: 209.8
1978
Male, age 76, both hemispheres
253.7
2737
Female, age 85, both hemispheres
224.1
2164
Male, age 80, both hemispheres
151.6
Subcoeruleus area nTPM: 252.1
2323
Female, age 91, left hemisphere
288.3
2451
Male, age 74, both hemispheres
280.1
1958
Male, age 80, both hemispheres
262.6
2369
Female, age 85, left hemisphere
256.6
2089
Male, age 76, left hemisphere
172.7
Superior olive nTPM: 147.2
2020
Male, age 76, both hemispheres
198.0
2364
Male, age 74, right hemisphere
192.2
1875
Female, age 85, both hemispheres
138.2
2329
Male, age 80, right hemisphere
107.3
2561
Female, age 91, both hemispheres
100.3
Ventral periolivary nuclei nTPM: 156.9
2023
Male, age 76, both hemispheres
205.2
2130
Female, age 85, both hemispheres
191.8
2165
Male, age 80, both hemispheres
151.5
2794
Female, age 91, left hemisphere
79.3
Ventrolateral tegmental area, A5 NE cell group nTPM: 175.2
2359
Male, age 61, both hemispheres
241.8
1959
Male, age 76, both hemispheres
201.5
2840
Female, age 85, both hemispheres
195.4
2449
Male, age 74, both hemispheres
149.4
2161
Male, age 80, both hemispheres
137.9
2456
Female, age 91, both hemispheres
125.5
PONS - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
241.7
Pig sample
Sample description
nTPM
Pons nTPM: 241.7
Samples: 4
Max nTPM: 281.1
Min nTPM: 221.4
Sample A
Female
281.1
Sample B
Female
237.2
Sample C
Male
221.4
Sample D
Male
227.1
PONS - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.
The Human Protein Atlas project is funded
