We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
STOM
HPA
RESOURCES
  • TISSUE
  • BRAIN
  • SINGLE CELL
  • SUBCELLULAR
  • CANCER
  • BLOOD
  • CELL LINE
  • STRUCTURE & INTERACTION
ABOUT
  • INTRODUCTION
  • HISTORY
  • ORGANIZATION
  • PUBLICATIONS
  • ANTIBODY SUBMISSION
  • ANTIBODY AVAILABILITY
  • ACKNOWLEDGMENTS
  • CONTACT
NEWS
  • NEWS ARTICLES
  • PRESS ROOM
LEARN
  • DICTIONARY
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
  • METHODS
  • EDUCATIONAL VIDEOS
DATA
  • DOWNLOADABLE DATA
  • PUBLICATION DATA
  • RELEASE HISTORY
HELP
  • ANTIBODY VALIDATION
  • ASSAYS & ANNOTATION
  • DISCLAIMER
  • HELP & FAQ
  • PRIVACY STATEMENT
  • LICENCE & CITATION
Fields »
Search result

Field
Term
Gene name
Class
Subclass
Class
Keyword
Chromosome
External id
Tissue
Cell type
Expression
Antibody panel
Tissue
Main location
Patient ID
Annotation
Tissue
Category
Tau score
Cluster
Reliability
Brain region
Category
Tau score
Brain region
Category
Tau score
Brain region
Category
Tau score
Cluster
Reliability
Tissue
Cell type
Enrichment
Cell type
Category
Tau score
Cell type
Category
Tau score
Cell type
Category
Tau score
Cell lineage
Category
Tau score
Cluster
Cluster
Location
Searches
Location
Cell line
Class
Type
Phase
Reliability
Cancer
Prognosis
Cancer
Category
Cancer
Category
Tau score
Cluster
Variants
Interacting gene (ensg_id)
Type
Number of interactions
Pathway
Category
Score
Score
Score
Validation
Validation
Validation
Validation
Antibodies
Data type
Column


  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • SUBCELL

  • CANCER

  • BLOOD

  • CELL LINE

  • STRUCT & INT

  • STOM
BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:114.0 nTPM
HPA Brain:114.2 nTPM
GTEx:114.0 nTPM
FANTOM5:184.3 Scaled Tags Per Million
Pig:10.6 nTPM
Mouse:10.0 nTPM
Allen mouse:5.9 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

114.2
Sample id Sample description nTPM
Amygdala
nTPM: 110.1
1987 Female, age 91, left hemisphere 130.2
2695 Female, age 67, right hemisphere 123.7
2514 Male, age 75, right hemisphere 112.2
2517 Female, age 94, left hemisphere 97.6
2814 Male, age 76, right hemisphere 86.8
Basal amygdala
nTPM: 92.3
2609 Male, age 75, right hemisphere 124.4
2243 Female, age 91, right hemisphere 109.6
2110 Male, age 80, left hemisphere 92.5
1955 Male, age 76, both hemispheres 85.4
2685 Female, age 94, left hemisphere 71.1
2827 Female, age 67, right hemisphere 70.8
Central amygdala
nTPM: 114.2
2515 Male, age 75, right hemisphere 157.9
2701 Female, age 91, right hemisphere 126.4
2239 Male, age 80, left hemisphere 108.5
2826 Female, age 94, left hemisphere 92.1
1905 Male, age 76, both hemispheres 85.9
Corticomedial amygdala
nTPM: 107.8
2428 Male, age 75, right hemisphere 147.6
2242 Female, age 91, right hemisphere 129.4
2829 Male, age 80, left hemisphere 112.5
2429 Female, age 94, left hemisphere 99.1
2240 Male, age 76, both hemispheres 95.1
2535 Female, age 67, right hemisphere 62.7
Lateral amygdala
nTPM: 93.5
2516 Male, age 75, right hemisphere 113.7
2255 Female, age 91, right hemisphere 105.7
2830 Female, age 67, right hemisphere 93.7
2256 Male, age 80, left hemisphere 91.8
1883 Male, age 76, both hemispheres 81.8
2534 Female, age 94, left hemisphere 74.6

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

114.0
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 114.0
Samples: 152

Max nTPM: 337.3
Min nTPM: 32.7
Std nTPM: 54.6
Median nTPM: 100.1
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 337.3
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 306.5
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 260.6
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 254.6
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 227.5
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 225.8
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 220.9
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 217.6
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 217.5
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 215.7
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 214.9
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 211.8
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 211.3
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 207.4
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 205.9
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 200.7
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 190.7
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 188.5
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 185.2
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 184.8
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 175.6
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 173.6
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 169.5
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 167.7
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 166.7
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 159.9
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 159.4
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 159.4
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 156.1
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 152.2
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 151.8
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 148.4
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 148.3
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 147.6
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 146.4
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 146.2
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 145.8
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 145.7
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 145.1
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 143.7
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 138.3
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 133.6
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 132.0
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 129.4
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 128.9
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 128.6
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 126.7
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 124.6
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 123.1
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 122.2
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 122.1
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 115.8
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 115.7
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 114.0
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 113.3
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 113.2
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 111.3
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 110.9
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 110.1
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 109.9
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 109.5
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 109.1
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 108.8
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 108.4
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 108.3
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 108.3
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 107.7
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 106.7
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 106.1
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 104.8
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 103.1
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 103.0
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 102.6
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 100.8
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 100.4
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 100.3
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 99.9
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 99.9
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 99.6
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 98.4
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 97.7
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 97.7
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 95.3
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 93.9
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 92.2
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 91.7
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 91.4
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 90.7
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 90.7
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 90.6
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 88.5
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 88.4
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 88.1
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 88.1
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 87.7
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 87.6
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 87.3
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 86.9
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 85.4
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 83.6
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 82.6
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 82.2
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 81.6
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 81.3
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 78.1
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 78.0
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 77.7
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 77.0
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 77.0
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 77.0
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 76.6
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 76.1
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 76.0
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 75.4
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 75.3
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 74.8
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 73.2
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 73.0
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 72.7
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 72.6
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 72.3
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 72.2
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 71.8
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 71.1
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 70.6
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 70.2
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 70.1
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 69.5
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 69.0
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 68.9
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 68.5
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 68.1
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 67.8
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 67.7
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 66.4
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 61.2
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 60.3
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 57.0
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 56.7
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 55.6
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 55.0
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 55.0
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 54.4
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 52.5
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 48.8
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 48.3
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 48.2
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 43.1
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 40.6
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 35.2
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 34.8
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 32.7
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

184.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 184.3
FF:10151-102I7 76 years, female 184.3

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

10.6
Pig sample Sample description nTPM
Amygdala
nTPM: 10.6
Samples: 4

Max nTPM: 11.6
Min nTPM: 9.3
Sample A Female 11.6
Sample B Female 11.1
Sample C Male 10.2
Sample D Male 9.3

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

10.0
Mouse sample Sample description nTPM
Amygdala
nTPM: 10.0
Samples: 4

Max nTPM: 11.4
Min nTPM: 9.2
Sample A Male 9.2
Sample B Male 9.4
Sample C Female 10.1
Sample D Female 11.4

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

5.9
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 5.9
69080003 Antisense, RP_050324_01_C03, Mouse strain C57BL/6J (56 days, male) 11.9
71919254 Antisense, RP_051012_02_C06, Mouse strain C57BL/6J (56 days, male) 0.0

Contact

  • NEWS ARTICLES
  • PRESS ROOM

The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS

The Human Protein Atlas

  • DOWNLOADABLE DATA
  • LICENCE & CITATION
  • HELP & FAQ
The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.


contact@proteinatlas.org