MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:932.9 nTPM
HPA Brain:242.0 nTPM
GTEx:932.9 nTPM
FANTOM5:34.2 Scaled Tags Per Million
Pig:5.4 nTPM
Mouse:491.4 nTPM
Allen mouse:14.9 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 242.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 216.1
2586 Male, age 75, left hemisphere 269.2
2666 Male, age 74, left hemisphere 246.2
2828 Female, age 72, unknown 225.8
1870 Female, age 42, unknown 218.4
2411 Female, age 72, unknown 211.9
1833 Male, age 53, unknown 204.8
1827 Male, age 72, unknown 203.5
1830 Male, age 51, unknown 203.3
2019 Male, age 18, unknown 202.5
2219 Male, age 76, both hemispheres 175.6
Dorsal raphe nucleus
nTPM: 203.8
2298 Female, age 72, unknown 215.1
1828 Male, age 53, unknown 209.3
2016 Female, age 72, unknown 209.1
2750 Male, age 76, both hemispheres 201.3
2047 Male, age 72, unknown 184.0
Inferior colliculus
nTPM: 208.4
2849 Male, age 72, unknown 212.5
1848 Female, age 42, unknown 211.8
1890 Male, age 53, unknown 210.4
2097 Female, age 72, unknown 198.7
Median raphe nucleus
nTPM: 191.7
2220 Male, age 76, midline 191.7
Periaquaductal grey, anterior
nTPM: 218.3
2502 Female, age 75, unknown 242.5
1795 Male, age 51, unknown 207.2
1947 Male, age 18, unknown 205.1
Periaquaductal grey, dorsal
nTPM: 187.8
1840 Male, age 53, unknown 220.6
1831 Male, age 72, unknown 189.2
2464 Female, age 72, unknown 182.7
2850 Male, age 76, both hemispheres 158.6
Periaquaductal grey, lateral
nTPM: 184.0
2053 Male, age 18, unknown 196.3
2272 Male, age 74, both hemispheres 184.1
2140 Male, age 76, both hemispheres 171.6
Pretectal area
nTPM: 193.0
2407 Male, age 75, both hemispheres 216.1
2825 Male, age 18, unknown 208.8
1817 Female, age 42, unknown 208.1
2007 Male, age 72, unknown 203.1
1816 Male, age 51, unknown 198.0
1815 Male, age 53, unknown 194.1
2224 Female, age 72, unknown 190.1
2316 Male, age 76, right hemisphere 182.4
2273 Male, age 74, both hemispheres 177.6
1944 Female, age 72, unknown 177.3
2667 Female, age 75, unknown 167.4
Red nucleus
nTPM: 220.6
2584 Male, age 75, left hemisphere 269.7
2503 Female, age 72, unknown 246.1
1821 Female, age 72, unknown 234.0
2769 Male, age 72, unknown 231.2
1865 Male, age 51, unknown 230.3
2227 Male, age 72, unknown 223.2
2725 Female, age 75, unknown 211.4
1904 Male, age 53, unknown 210.8
2785 Male, age 18, unknown 206.0
2588 Male, age 74, left hemisphere 205.1
1954 Female, age 42, unknown 204.8
2823 Male, age 76, right hemisphere 174.3
Substantia nigra
nTPM: 242.0
2665 Male, age 74, both hemispheres 288.1
1851 Male, age 51, unknown 264.4
2699 Male, age 18, unknown 252.5
2241 Male, age 72, unknown 244.5
2590 Female, age 75, unknown 243.2
2583 Male, age 75, right hemisphere 242.3
1916 Female, age 42, unknown 232.7
2409 Female, age 72, unknown 231.4
1941 Male, age 53, unknown 223.6
1889 Female, age 72, unknown 197.6
Superior colliculus
nTPM: 212.7
2664 Male, age 75, both hemispheres 266.2
2587 Male, age 74, left hemisphere 239.9
2668 Female, age 75, unknown 224.1
2261 Male, age 18, unknown 208.5
1995 Male, age 72, unknown 207.4
1796 Male, age 53, unknown 207.1
1839 Male, age 51, unknown 203.5
1913 Female, age 42, unknown 203.2
2087 Female, age 72, unknown 185.4
1895 Male, age 76, right hemisphere 181.4
Ventral tegmental area
nTPM: 216.7
1915 Female, age 42, unknown 245.9
2223 Female, age 72, unknown 243.7
1942 Male, age 51, unknown 209.7
2021 Male, age 53, unknown 208.7
2410 Female, age 72, unknown 202.3
2218 Male, age 76, both hemispheres 189.5

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 932.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 932.9
Samples: 139

Max nTPM: 2088.7
Min nTPM: 475.5
Std nTPM: 270.5
Median nTPM: 887.1
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 2088.7
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 1866.6
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 1847.6
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 1725.0
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 1625.8
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 1538.9
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 1497.8
GTEX-R55E-0011-R2A-SM-EYYV9 20-29 years, male 1341.1
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 1328.1
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 1322.2
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 1319.7
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 34.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 34.2
FF:10158-103A5 76 years, female 34.2

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 5.4
Pig sample Sample description nTPM
Substantia nigra
nTPM: 4.6
Samples: 4

Max nTPM: 8.4
Min nTPM: 1.1
Sample A Female 1.1
Sample B Female 8.4
Sample C Male 4.2
Sample D Male 4.5
Midbrain
nTPM: 4.3
Samples: 4

Max nTPM: 7.9
Min nTPM: 1.2
Sample A Female 1.2
Sample B Female 7.9
Sample C Male 4.8
Sample D Male 3.4
Periaqueductal gray
nTPM: 5.4
Samples: 3

Max nTPM: 7.6
Min nTPM: 3.4
Sample B Female 7.6
Sample C Male 5.2
Sample D Male 3.4
Superior colliculi
nTPM: 5.0
Samples: 4

Max nTPM: 9.0
Min nTPM: 1.0
Sample A Female 1.0
Sample B Female 9.0
Sample C Male 6.1
Sample D Male 3.8

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 491.4
Mouse sample Sample description nTPM
Midbrain
nTPM: 491.4
Samples: 4

Max nTPM: 533.9
Min nTPM: 457.0
Sample A Male 533.9
Sample B Male 457.0
Sample C Female 466.1
Sample D Female 508.6

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 14.9
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 14.9
69818332 Antisense, RP_050510_04_H05, Mouse strain C57BL/6J (56 days, male) 16.1
81600152 Antisense, RP_080320_03_A06, Mouse strain C57BL/6J (56 days, male) 13.7

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