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TISSUE SPINAL CORD Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
Dictionary
Tissue proteome
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:983.0 nTPM
HPA Brain:306.5 nTPM
GTEx:983.0 nTPM
FANTOM5:41.4 Scaled Tags Per Million
Pig:5.4 nTPM

SPINAL CORD - Annotated protein expression
Pending normal tissue analysis

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

306.5
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 241.7
2565 Male, age 75, midline 299.0
1981 Female, age 72, midline 276.0
2194 Female, age 79, both hemispheres 216.8
2816 Male, age 47, midline 211.3
2048 Male, age 55, midline 205.4
Cervical spinal cord, dorsal horn
nTPM: 227.4
2173 Female, age 72, unknown 294.7
2296 Male, age 66, both hemispheres 265.5
2069 Male, age 47, both hemispheres 253.3
1877 Male, age 55, unknown 220.3
2721 Male, age 90, both hemispheres 167.1
2297 Male, age 75, both hemispheres 163.5
Cervical spinal cord, ventral horn
nTPM: 306.5
2480 Male, age 75, both hemispheres 410.8
2809 Male, age 90, both hemispheres 377.4
2098 Female, age 72, unknown 319.8
2295 Male, age 66, both hemispheres 286.3
2068 Male, age 55, unknown 255.0
2820 Female, age 79, both hemispheres 189.7

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

983.0
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 983.0
Samples: 159

Max nTPM: 1656.4
Min nTPM: 518.7
Std nTPM: 227.2
Median nTPM: 966.7
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 1656.4
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 1650.2
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 1575.5
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 1494.1
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 1431.5
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 1428.9
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 1409.1
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 1404.2
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 1387.0
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 1368.8
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 1350.3
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 1326.1
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 1325.4
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 1295.6
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 1291.5
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 1283.6
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 1282.3
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 1271.9
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 1271.8
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 1267.2
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 1256.8
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 1238.4
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 1237.6
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 1236.2
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 1231.0
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 1217.2
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 1215.7
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 1213.3
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 1211.6
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 1206.9
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 1192.6
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 1176.6
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 1161.8
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 1156.2
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 1154.7
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 1147.4
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 1143.6
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 1136.7
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 1123.4
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 1119.0
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 1116.0
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 1103.0
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 1099.6
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 1098.2
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 1092.3
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 1091.8
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 1091.2
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 1084.7
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 1081.1
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 1072.4
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 1069.1
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 1061.8
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 1059.5
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 1056.5
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 1054.4
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 1052.7
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 1052.5
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 1050.9
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 1044.2
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 1041.3
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 1034.6
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 1030.0
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 1018.8
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 1014.7
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 1012.9
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 1011.4
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 1011.3
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 1010.7
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 1009.7
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 1008.6
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 1008.0
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 1006.2
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 997.8
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 997.5
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 997.5
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 978.4
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 978.3
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 976.4
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 969.6
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 966.7
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 965.0
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 962.6
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 959.1
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 957.2
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 947.8
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 941.5
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 940.0
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 935.0
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 929.8
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 929.3
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 929.0
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 924.7
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 917.2
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 914.5
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 912.8
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 908.1
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 907.4
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 895.3
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 892.1
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 885.8
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 885.1
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 879.1
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 877.0
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 876.2
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 874.8
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 874.0
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 871.4
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 865.4
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 863.5
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 861.6
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 848.8
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 832.6
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 830.7
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 825.0
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 820.6
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 816.1
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 814.0
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 806.6
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 806.6
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 804.6
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 803.1
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 802.9
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 801.8
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 800.1
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 794.7
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 793.3
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 791.5
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 777.0
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 776.9
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 775.0
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 773.6
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 771.3
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 768.2
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 762.1
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 758.9
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 755.1
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 749.1
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 742.2
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 736.8
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 732.1
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 721.3
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 709.7
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 705.3
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 697.4
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 693.7
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 687.0
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 686.7
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 683.4
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 680.7
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 672.1
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 663.2
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 646.0
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 639.1
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 620.2
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 601.6
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 567.9
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 563.0
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 526.0
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 518.7
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

41.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 41.4
FF:10181-103D1 60 years, female 51.6
FF:10159-103A6 76 years, female 31.1

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

5.4
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 5.4
Samples: 4

Max nTPM: 9.1
Min nTPM: 1.3
Sample A Female 1.3
Sample B Female 9.1
Sample C Male 7.2
Sample D Male 3.9
Ventral spinal cord
nTPM: 4.8
Samples: 4

Max nTPM: 8.3
Min nTPM: 1.7
Sample A Female 1.7
Sample B Female 8.3
Sample C Male 4.2
Sample D Male 4.8

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