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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:291.5 nTPM
HPA Brain:243.7 nTPM
GTEx:291.5 nTPM
FANTOM5:161.0 Scaled Tags Per Million

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

243.7
Sample id Sample description nTPM
Amygdala
nTPM: 243.7
2514 Male, age 75, right hemisphere 301.2
2695 Female, age 67, right hemisphere 264.4
1987 Female, age 91, left hemisphere 231.6
2814 Male, age 76, right hemisphere 211.6
2517 Female, age 94, left hemisphere 209.8
Basal amygdala
nTPM: 194.4
2609 Male, age 75, right hemisphere 307.6
2243 Female, age 91, right hemisphere 218.2
1955 Male, age 76, both hemispheres 204.3
2110 Male, age 80, left hemisphere 185.8
2685 Female, age 94, left hemisphere 145.0
2827 Female, age 67, right hemisphere 105.3
Central amygdala
nTPM: 204.7
2515 Male, age 75, right hemisphere 237.8
1905 Male, age 76, both hemispheres 222.1
2239 Male, age 80, left hemisphere 216.3
2826 Female, age 94, left hemisphere 175.6
2701 Female, age 91, right hemisphere 171.7
Corticomedial amygdala
nTPM: 207.6
2428 Male, age 75, right hemisphere 273.6
2829 Male, age 80, left hemisphere 248.8
2242 Female, age 91, right hemisphere 229.7
2429 Female, age 94, left hemisphere 199.0
2240 Male, age 76, both hemispheres 172.2
2535 Female, age 67, right hemisphere 122.2
Lateral amygdala
nTPM: 192.3
2516 Male, age 75, right hemisphere 298.9
1883 Male, age 76, both hemispheres 203.3
2256 Male, age 80, left hemisphere 184.6
2534 Female, age 94, left hemisphere 172.8
2255 Female, age 91, right hemisphere 170.5
2830 Female, age 67, right hemisphere 123.6

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

291.5
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 291.5
Samples: 152

Max nTPM: 630.1
Min nTPM: 69.6
Std nTPM: 115.3
Median nTPM: 273.7
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 630.1
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 596.4
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 584.7
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 571.5
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 555.9
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 515.7
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 515.3
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 507.7
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 504.6
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 479.6
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 475.3
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 460.5
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 454.9
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 454.7
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 448.9
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 444.9
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 441.8
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 434.9
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 429.3
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 428.3
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 426.8
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 417.4
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 411.5
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 408.9
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 407.2
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 407.0
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 398.9
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 397.1
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 396.4
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 392.1
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 391.7
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 388.2
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 384.3
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 374.7
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 370.2
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 364.4
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 361.3
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 356.9
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 354.4
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 350.9
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 350.7
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 350.2
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 349.8
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 349.7
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 347.7
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 346.0
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 345.9
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 344.7
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 342.6
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 338.5
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 337.4
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 336.0
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 335.7
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 325.1
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 322.6
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 321.7
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 320.2
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 318.7
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 318.0
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 315.8
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 315.4
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 313.0
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 312.6
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 309.7
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 307.1
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 304.7
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 293.2
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 292.4
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 291.3
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 290.0
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 287.7
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 287.0
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 279.5
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 278.7
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 275.2
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 274.0
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 273.4
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 273.2
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 272.4
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 271.3
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 268.3
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 268.3
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 267.6
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 267.0
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 265.4
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 263.9
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 263.5
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 258.4
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 254.6
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 253.8
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 251.8
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 246.0
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 244.8
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 243.3
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 243.1
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 242.2
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 241.3
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 239.6
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 238.7
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 233.4
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 231.4
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 231.3
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 228.9
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 228.0
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 225.7
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 225.4
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 224.7
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 221.2
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 220.5
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 219.9
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 216.8
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 213.5
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 210.1
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 209.4
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 209.0
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 207.9
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 206.7
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 205.9
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 201.7
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 200.0
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 199.8
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 197.3
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 196.0
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 192.3
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 189.1
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 187.2
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 185.5
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 182.9
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 182.5
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 181.9
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 176.8
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 173.3
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 170.9
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 161.4
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 160.2
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 159.1
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 144.3
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 142.4
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 140.2
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 139.3
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 136.7
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 131.8
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 129.6
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 117.2
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 112.9
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 111.8
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 95.6
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 92.3
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 86.6
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 80.6
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 76.4
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 69.6
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

161.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 161.0
FF:10151-102I7 76 years, female 161.0

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