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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:123.5 nTPM
HPA Brain:259.8 nTPM
GTEx:123.5 nTPM
FANTOM5:74.7 Scaled Tags Per Million

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

259.8
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 232.3
1981 Female, age 72, midline 304.5
2048 Male, age 55, midline 278.3
2194 Female, age 79, both hemispheres 206.2
2565 Male, age 75, midline 197.0
2816 Male, age 47, midline 175.4
Cervical spinal cord, dorsal horn
nTPM: 259.8
2173 Female, age 72, unknown 334.3
2069 Male, age 47, both hemispheres 271.2
2721 Male, age 90, both hemispheres 256.7
1877 Male, age 55, unknown 243.9
2297 Male, age 75, both hemispheres 242.3
2296 Male, age 66, both hemispheres 210.5
Cervical spinal cord, ventral horn
nTPM: 236.4
2295 Male, age 66, both hemispheres 279.6
2809 Male, age 90, both hemispheres 268.4
2098 Female, age 72, unknown 247.2
2480 Male, age 75, both hemispheres 237.9
2068 Male, age 55, unknown 205.5
2820 Female, age 79, both hemispheres 179.7

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

123.5
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 123.5
Samples: 159

Max nTPM: 228.9
Min nTPM: 74.0
Std nTPM: 29.7
Median nTPM: 119.9
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 228.9
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 221.5
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 218.5
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 216.8
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 212.0
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 203.9
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 200.1
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 183.9
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 183.0
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 181.7
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 174.7
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 165.7
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 165.0
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 163.9
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 160.8
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 156.2
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 154.5
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 153.9
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 152.4
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 152.3
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 150.1
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 147.1
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 146.7
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 146.5
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 146.4
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 145.8
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 145.3
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 145.3
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 145.0
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 144.1
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 143.9
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 143.8
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 143.5
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 141.8
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 141.3
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 140.5
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 139.8
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 138.9
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 137.1
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 135.6
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 135.6
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 135.5
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 134.9
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 134.1
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 133.0
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 132.6
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 131.9
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 131.5
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 130.8
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 129.9
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 129.8
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 129.5
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 129.2
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 128.6
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 128.4
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 128.1
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 127.6
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 127.6
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 127.4
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 127.1
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 126.9
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 126.3
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 126.1
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 125.6
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 125.2
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 125.1
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 125.0
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 124.8
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 124.6
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 124.2
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 124.1
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 124.1
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 123.9
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 122.5
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 122.5
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 122.2
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 122.0
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 121.7
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 120.0
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 119.9
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 119.8
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 119.5
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 118.2
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 117.7
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 117.6
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 116.9
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 115.5
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 115.3
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 114.1
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 113.9
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 113.5
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 113.3
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 113.3
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 112.1
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 111.8
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 111.7
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 111.6
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 111.4
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 111.1
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 110.9
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 110.7
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 110.3
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 109.5
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 109.3
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 108.1
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 107.4
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 107.3
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 107.1
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 107.1
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 106.8
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 106.4
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 105.9
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 105.8
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 105.2
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 105.1
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 104.9
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 104.9
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 104.9
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 104.8
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 104.8
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 103.9
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 103.2
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 102.7
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 102.4
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 102.1
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 101.9
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 100.7
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 100.5
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 99.9
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 99.8
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 99.4
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 99.3
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 98.5
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 98.4
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 97.5
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 97.1
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 96.6
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 96.4
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 96.4
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 95.2
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 94.5
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 91.7
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 90.8
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 90.2
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 89.9
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 89.7
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 88.8
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 88.7
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 87.9
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 87.5
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 84.3
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 83.8
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 81.2
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 80.6
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 78.7
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 76.1
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 75.3
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 74.2
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 74.0
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

74.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 74.7
FF:10181-103D1 60 years, female 93.5
FF:10159-103A6 76 years, female 55.8

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