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BRAIN HIPPOCAMPAL FORMATION Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
PRIMARY MOUSE DATA
ANTIBODIES
AND
VALIDATION
Brain proteome
Hippocampal formation
HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Not detected
Neuronal cells: Low
Mouse brain, Intensity
Hippocampal formationi

Protein expression in mouse brain using immunofluorescence is reported as mean fluorescence intensity .

96.090
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:225.9 nTPM
HPA Brain:375.6 nTPM
GTEx:225.9 nTPM
FANTOM5:156.4 Scaled Tags Per Million
Pig:144.5 nTPM
Mouse:235.8 nTPM
Allen mouse:13.8 Expression energy

HIPPOCAMPUS - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA051336
Glial cells Not detected
Neuronal cells Low


HIPPOCAMPAL FORMATION - Mouse brain profilei

Protein expression in mouse brain using immunofluorescence is reported as fluorescence intensity .

, antibody HPA051336
Hippocampal formation mean intensity 96.090
intensityi

Protein expression in mouse brain using immunofluorescence is reported as mean fluorescence intensity .

FRONT BACK
Polymorph layer of the dentate gyrus 42.839
Molecular layer of the dentate gyrus 23.816
Granular dentate gyrus 17.629
CA1 - oriens layer 46.453
CA1 - pyramidal layer 49.561
CA1 - radiatum layer 48.990
CA2 - oriens layer 68.555
CA2 - pyramidal layer 96.090
CA2 - radiatum layer 61.674
CA3 - oriens layer 60.232
CA3 - pyramidal layer 60.627
CA3 - radiatum layer 71.127
Stratum lucidum 38.380
Lacunosum moleculare 57.378
Subiculum 43.195

HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

375.6
Sample id Sample description nTPM
Hippocampus
nTPM: 375.6
2621 Female, age 67, right hemisphere 510.8
2148 Female, age 91, left hemisphere 378.0
1911 Female, age 85, right hemisphere 360.4
1898 Male, age 80, left hemisphere 350.9
1855 Male, age 76, left hemisphere 338.8
2529 Female, age 94, left hemisphere 315.0
Dentate gyrus
nTPM: 340.8
1927 Female, age 91, both hemispheres 448.2
2531 Female, age 67, both hemispheres 414.4
2530 Female, age 94, left hemisphere 344.6
2010 Male, age 76, both hemispheres 328.8
2528 Male, age 74, both hemispheres 280.7
2246 Female, age 85, both hemispheres 228.1
Entorhinal gyrus
nTPM: 256.4
2613 Female, age 94, left hemisphere 384.1
2764 Male, age 80, right hemisphere 282.4
1938 Female, age 85, left hemisphere 252.1
1787 Male, age 76, left hemisphere 241.5
2686 Male, age 75, right hemisphere 224.3
2117 Female, age 91, right hemisphere 154.1
Hippocampus, CA1
nTPM: 367.1
2749 Male, age 80, left hemisphere 639.8
2527 Male, age 74, both hemispheres 359.3
1873 Female, age 85, both hemispheres 353.0
2045 Male, age 76, both hemispheres 283.5
2082 Female, age 91, right hemisphere 200.0
Hippocampus, CA2
nTPM: 332.2
1963 Male, age 80, left hemisphere 609.1
1892 Male, age 76, both hemispheres 356.7
2437 Female, age 94, left hemisphere 285.9
2249 Male, age 74, both hemispheres 270.5
2113 Female, age 91, right hemisphere 257.6
1940 Female, age 85, left hemisphere 213.4
Hippocampus, CA3
nTPM: 366.8
2137 Male, age 80, left hemisphere 573.3
2861 Female, age 67, both hemispheres 536.6
2620 Female, age 94, left hemisphere 348.1
1867 Male, age 76, both hemispheres 289.5
2436 Male, age 74, both hemispheres 241.2
1891 Female, age 85, both hemispheres 212.0
Parahippocampal cortex
nTPM: 256.1
2245 Female, age 91, both hemispheres 416.7
2622 Female, age 67, right hemisphere 284.1
2018 Male, age 76, both hemispheres 265.8
2250 Female, age 67, right hemisphere 250.6
2532 Female, age 72, left hemisphere 245.2
1850 Male, age 80, both hemispheres 238.7
1933 Female, age 85, both hemispheres 232.9
1990 Female, age 91, right hemisphere 225.2
2693 Female, age 94, both hemispheres 213.8
2692 Male, age 74, both hemispheres 188.3
Perirhinal gyrus
nTPM: 258.9
1847 Female, age 91, left hemisphere 302.6
2521 Female, age 94, right hemisphere 301.9
1794 Male, age 80, right hemisphere 268.3
1841 Female, age 85, right hemisphere 223.3
2848 Male, age 76, right hemisphere 198.6
Subiculum
nTPM: 221.1
1901 Male, age 80, both hemispheres 289.6
2042 Male, age 76, both hemispheres 252.1
2729 Female, age 91, right hemisphere 217.2
1977 Female, age 85, both hemispheres 209.4
2619 Male, age 74, both hemispheres 186.6
2438 Female, age 94, left hemisphere 171.8

HIPPOCAMPAL FORMATION - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

225.9
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 225.9
Samples: 197

Max nTPM: 831.4
Min nTPM: 24.7
Std nTPM: 144.2
Median nTPM: 204.1
GTEX-13PDP-0011-R1a-SM-5PNX5 60-69 years, male 831.4
GTEX-1GMR8-0011-R1b-SM-CJI2O 50-59 years, female 630.3
GTEX-13O3Q-0011-R1b-SM-5KM3L 50-59 years, male 628.3
GTEX-144GL-0011-R1a-SM-5PNZ5 50-59 years, male 611.9
GTEX-WVLH-0011-R1A-SM-4MVOK 50-59 years, male 606.9
GTEX-13FXS-0011-R1a-SM-5K7U6 50-59 years, male 559.8
GTEX-11EI6-0011-R1a-SM-DO93L 60-69 years, male 554.9
GTEX-13FTY-0011-R1a-SM-5LZXE 40-49 years, female 521.7
GTEX-12WSE-0011-R1b-SM-5GU4V 20-29 years, male 520.7
GTEX-14PN4-0011-R1b-SM-69LP8 50-59 years, male 515.7
GTEX-1H3VE-0011-R1a-SM-A9G1K 40-49 years, male 503.8
GTEX-1IOXB-0011-R1a-SM-D4P27 50-59 years, male 485.6
GTEX-1HT8W-0011-R1b-SM-CJI3V 30-39 years, male 455.3
GTEX-1HSMO-0011-R1a-SM-CM2SV 60-69 years, male 454.1
GTEX-139TT-0011-R1a-SM-5LZVD 60-69 years, male 449.3
GTEX-1F75A-0011-R1b-SM-CE6RA 50-59 years, male 446.4
GTEX-13FLW-0011-R1b-SM-5LZX2 50-59 years, male 440.3
GTEX-WHSE-0011-R1A-SM-3P5ZK 20-29 years, male 431.2
GTEX-1IKK5-0011-R1b-SM-CE6SQ 60-69 years, male 424.6
GTEX-Q2AG-0011-R1A-SM-2HMJI 40-49 years, female 418.0
GTEX-1F6I4-0011-R1a-SM-9OSWU 60-69 years, male 408.6
GTEX-1CB4G-0011-R1b-SM-9QEHT 60-69 years, male 391.8
GTEX-14ASI-0011-R1b-SM-5S2TY 60-69 years, male 387.3
GTEX-11DXW-0011-R1a-SM-DNZZD 40-49 years, male 384.0
GTEX-17JCI-0011-R1b-SM-718A3 60-69 years, female 382.4
GTEX-T5JC-0011-R1A-SM-32PM6 20-29 years, male 382.4
GTEX-13O3O-0011-R1b-SM-5KM2K 60-69 years, female 378.3
GTEX-YFC4-0011-R1a-SM-4V6EH 40-49 years, female 377.4
GTEX-13N2G-0011-R1b-SM-5MR3G 60-69 years, male 373.5
GTEX-1GZ2Q-0011-R1a-SM-CJI2Y 40-49 years, male 373.0
GTEX-1B8L1-0011-R1a-SM-7P8SS 60-69 years, male 370.7
GTEX-N7MS-0011-R1a-SM-2HMJG 60-69 years, male 368.8
GTEX-13112-0011-R1b-SM-5HL7K 50-59 years, male 355.4
GTEX-144GO-0011-R1a-SM-5PNWO 60-69 years, male 354.8
GTEX-1A8G6-0011-R1a-SM-7P8PC 60-69 years, male 349.1
GTEX-17HG3-0011-R1a-SM-7LG6H 30-39 years, female 347.2
GTEX-13SLW-0011-R1a-SM-5S2W7 70-79 years, male 346.9
GTEX-13OW7-0011-R1b-SM-5L3HF 50-59 years, male 334.8
GTEX-1B8SF-0011-R1b-SM-7P8Q8 60-69 years, male 332.8
GTEX-Y8DK-0011-R1A-SM-4RGLO 60-69 years, male 332.7
GTEX-1GN1U-0011-R1a-SM-CJI25 50-59 years, female 331.0
GTEX-132Q8-0011-R1a-SM-5EGLK 60-69 years, male 330.6
GTEX-1GN73-0011-R1a-SM-CKZNT 60-69 years, male 325.6
GTEX-1GTWX-0011-R1a-SM-CE6RL 60-69 years, male 322.8
GTEX-131XH-0011-R1a-SM-5DUWA 50-59 years, male 318.8
GTEX-145MH-0011-R1b-SM-5PNWY 50-59 years, male 318.7
GTEX-1EX96-0011-R1a-SM-CE6R5 50-59 years, male 316.2
GTEX-1C6VR-0011-R1a-SM-7MXUE 60-69 years, male 314.1
GTEX-12WSM-0011-R1a-SM-5LZW6 60-69 years, male 309.7
GTEX-1F48J-0011-R1a-SM-9QEIC 50-59 years, female 307.7
GTEX-13FHP-0011-R1b-SM-5K7XL 50-59 years, male 306.2
GTEX-13JUV-0011-R1a-SM-5LZY4 40-49 years, female 302.7
GTEX-P44H-0011-R1A-SM-3NM8J 40-49 years, male 299.7
GTEX-1HBPI-0011-R1b-SM-A9SKF 50-59 years, male 292.6
GTEX-WL46-0011-R1A-SM-3LK6M 50-59 years, male 291.1
GTEX-1J1OQ-0011-R1a-SM-A9G1Z 40-49 years, female 290.0
GTEX-1EMGI-0011-R1b-SM-9OSWZ 60-69 years, male 285.5
GTEX-17HHY-0011-R1a-SM-7189V 50-59 years, male 285.3
GTEX-14E6D-0011-R1b-SM-5YYAW 50-59 years, male 284.9
GTEX-1EH9U-0011-R1b-SM-CJI2B 60-69 years, male 283.2
GTEX-14ABY-0011-R1a-SM-6EU2W 50-59 years, male 282.6
GTEX-WZTO-0011-R1B-SM-3NMAR 40-49 years, male 282.4
GTEX-11GS4-0011-R1a-SM-DO129 60-69 years, male 282.2
GTEX-13RTL-0011-R1a-SM-5PNZ8 40-49 years, male 271.4
GTEX-17F97-0011-R1b-SM-7IGM9 50-59 years, male 267.7
GTEX-16YQH-0011-R1a-SM-7LT8R 30-39 years, male 266.2
GTEX-1GF9W-0011-R1a-SM-9QEIQ 60-69 years, male 266.0
GTEX-14JIY-0011-R1a-SM-68713 60-69 years, male 260.9
GTEX-1B933-0011-R1b-SM-9QEGW 50-59 years, female 259.0
GTEX-1IY9M-0011-R1a-SM-EXURZ 60-69 years, male 257.9
GTEX-P44G-0011-R1A-SM-2I3FE 30-39 years, male 257.5
GTEX-1C64N-0011-R1b-SM-7P8Q7 50-59 years, male 256.6
GTEX-1IDJH-0011-R1b-SM-ARU6U 70-79 years, male 254.4
GTEX-1A3MX-0011-R1b-SM-7P8PH 60-69 years, male 252.0
GTEX-16Z82-0011-R1b-SM-7EPHZ 60-69 years, male 251.4
GTEX-1LG7Y-0011-R1a-SM-EYYWV 50-59 years, male 249.2
GTEX-13NYB-0011-R1b-SM-5KM4F 40-49 years, male 244.6
GTEX-1I1GS-0011-R1a-SM-CJI43 60-69 years, male 244.3
GTEX-11WQC-0011-R1b-SM-DO932 60-69 years, male 243.9
GTEX-RNOR-0011-R1A-SM-CNNP5 50-59 years, female 242.4
GTEX-13X6I-0011-R1b-SM-5PNZC 60-69 years, male 241.6
GTEX-131YS-0011-R1a-SM-5DUXC 60-69 years, female 241.1
GTEX-PVOW-0011-R1A-SM-32PL6 40-49 years, male 239.4
GTEX-11GSP-0011-R1a-SM-9QEJ3 60-69 years, female 237.7
GTEX-S7SE-0011-R1A-SM-2XCDE 50-59 years, male 235.9
GTEX-12ZZX-0011-R1a-SM-5EQ6B 40-49 years, female 232.2
GTEX-12WSD-0011-R1b-SM-5LZVY 60-69 years, female 231.1
GTEX-13OW6-0011-R1a-SM-5L3HQ 50-59 years, male 227.0
GTEX-NL3H-0011-R1a-SM-48TDJ 60-69 years, male 226.2
GTEX-1B996-0011-R1b-SM-7P8PO 60-69 years, male 224.2
GTEX-139T8-0011-R1a-SM-5HL75 60-69 years, male 223.3
GTEX-ZE7O-0011-R1a-SM-57WDM 50-59 years, female 222.9
GTEX-1313W-0011-R1b-SM-5EQ4A 50-59 years, female 221.4
GTEX-R55E-0011-R1A-SM-2TC6N 20-29 years, male 215.8
GTEX-1I1HK-0011-R1b-SM-CM2T7 60-69 years, male 213.1
GTEX-15CHQ-0011-R1a-SM-COH27 60-69 years, male 212.8
GTEX-16XZZ-0011-R1a-SM-7LTAH 60-69 years, male 210.7
GTEX-11ONC-0011-R1a-SM-57WD4 60-69 years, male 204.4
GTEX-17MF6-0011-R1a-SM-72D6O 40-49 years, male 204.1
GTEX-17HII-0011-R1b-SM-7MGVW 50-59 years, male 202.5
GTEX-1AX9I-0011-R1b-SM-7RHG2 60-69 years, male 202.1
GTEX-ZDXO-0011-R1a-SM-4WKF4 60-69 years, male 202.0
GTEX-1H3NZ-0011-R1a-SM-CKZP5 60-69 years, male 200.5
GTEX-1EWIQ-0011-R1a-SM-9OSX7 70-79 years, female 197.2
GTEX-1E1VI-0011-R1a-SM-ARZMM 50-59 years, male 196.1
GTEX-1H1ZS-0011-R1b-SM-A9G1E 70-79 years, male 194.2
GTEX-1399T-0011-R1b-SM-5DUWN 60-69 years, male 192.1
GTEX-TSE9-0011-R1A-SM-3DB7E 60-69 years, female 191.5
GTEX-15ER7-0011-R1b-SM-7KUE1 20-29 years, female 186.7
GTEX-WWYW-0011-R1A-SM-3TW8G 50-59 years, female 185.9
GTEX-14C5O-0011-R1b-SM-6AJBW 60-69 years, male 184.7
GTEX-14BIM-0011-R1a-SM-69LQI 60-69 years, female 183.0
GTEX-15DCD-0011-R1b-SM-6LPIJ 70-79 years, female 182.9
GTEX-14PJM-0011-R1a-SM-CNPO3 50-59 years, female 177.0
GTEX-N7MT-0011-R1a-SM-CNPO1 60-69 years, female 174.4
GTEX-1ICLZ-0011-R1b-SM-A9SM3 60-69 years, male 170.7
GTEX-X4XX-0011-R1B-SM-3P622 60-69 years, male 170.2
GTEX-NPJ7-0011-R1a-SM-3GACT 60-69 years, female 170.1
GTEX-12WSH-0011-R1a-SM-5GU5V 50-59 years, male 170.0
GTEX-1HGF4-0011-R1a-SM-CJI3S 60-69 years, male 169.5
GTEX-1LB8K-0011-R1b-SM-EZ6MV 50-59 years, male 169.5
GTEX-X585-0011-R1B-SM-46MVE 50-59 years, male 169.0
GTEX-ZF28-0011-R1a-SM-4WWD1 60-69 years, male 163.0
GTEX-ZUA1-0011-R1a-SM-4YCE2 40-49 years, male 160.9
GTEX-13N1W-0011-R1b-SM-5MR4T 70-79 years, male 160.0
GTEX-145LU-0011-R1a-SM-5Q5CE 50-59 years, male 159.9
GTEX-13NYS-0011-R1b-SM-5MR55 60-69 years, male 159.7
GTEX-1I1GQ-0011-R1a-SM-CY8GG 50-59 years, male 157.0
GTEX-ZAB4-0011-R1a-SM-4RGNO 40-49 years, male 156.3
GTEX-1EKGG-0011-R1b-SM-9QEI1 60-69 years, male 156.1
GTEX-13S7M-0011-R1b-SM-5PNZE 60-69 years, female 153.9
GTEX-12WSF-0011-R1a-SM-5DUVI 70-79 years, male 153.7
GTEX-1CAV2-0011-R1a-SM-ARZML 40-49 years, female 153.7
GTEX-YJ89-0011-R1a-SM-4RGLS 60-69 years, male 152.1
GTEX-T6MN-0011-R1A-SM-32QOY 50-59 years, male 145.9
GTEX-QVJO-0011-R1A-SM-2S1QI 60-69 years, female 145.5
GTEX-1J8Q2-0011-R1a-SM-D4P2D 60-69 years, male 143.6
GTEX-1HR98-0011-R1a-SM-ARZLQ 60-69 years, male 143.0
GTEX-11UD1-0011-R1b-SM-5BC7D 40-49 years, female 140.7
GTEX-13OVJ-0011-R1b-SM-5L3I6 50-59 years, female 139.9
GTEX-1HSKV-0011-R1b-SM-CMKH7 60-69 years, male 139.7
GTEX-1GN2E-0011-R1b-SM-CE6RJ 60-69 years, male 138.0
GTEX-1GF9V-0011-R1a-SM-CKZNQ 60-69 years, male 135.6
GTEX-1H1CY-0011-R1a-SM-CKZOZ 60-69 years, female 133.8
GTEX-1H1DG-0011-R1b-SM-CKZP1 70-79 years, male 132.9
GTEX-13CF2-0011-R1a-SM-5LZY1 60-69 years, male 131.5
GTEX-ZVZQ-0011-R1a-SM-57WBU 60-69 years, female 130.6
GTEX-13G51-0011-R1a-SM-5LZYR 60-69 years, male 123.7
GTEX-QDT8-0011-R1A-SM-32PKS 30-39 years, female 120.1
GTEX-OHPN-0011-R1A-SM-2I5GB 60-69 years, female 117.9
GTEX-14LLW-0011-R1a-SM-5ZZVD 70-79 years, female 116.4
GTEX-14LZ3-0011-R1a-SM-69LP5 60-69 years, female 107.5
GTEX-QMR6-0011-R1A-SM-32PKW 50-59 years, male 103.9
GTEX-17EVP-0011-R1a-SM-7DHLA 40-49 years, male 103.0
GTEX-13FHO-0011-R1b-SM-5KLZG 60-69 years, male 96.7
GTEX-14PJO-0011-R1b-SM-6AJAK 60-69 years, male 96.2
GTEX-1F6IF-0011-R1b-SM-9WG78 60-69 years, male 92.8
GTEX-1H3O1-0011-R1b-SM-CL554 60-69 years, male 91.2
GTEX-15UF6-0011-R1a-SM-9QEGH 70-79 years, female 88.5
GTEX-145LS-0011-R1b-SM-5PNUP 60-69 years, female 82.3
GTEX-1F75W-0011-R1a-SM-ARU81 60-69 years, male 81.3
GTEX-11GSO-0011-R1b-SM-57WD3 60-69 years, male 70.4
GTEX-13QJC-0011-R1b-SM-5S2UU 60-69 years, female 70.4
GTEX-1GZHY-0011-R1a-SM-CE6RR 50-59 years, female 69.1
GTEX-13OVL-0011-R1a-SM-5L3H5 50-59 years, male 68.8
GTEX-13NZ8-0011-R1b-SM-5KM3V 60-69 years, female 67.0
GTEX-1212Z-0011-R1b-SM-5BC72 60-69 years, male 66.2
GTEX-13QIC-0011-R1a-SM-5O9CJ 60-69 years, female 64.8
GTEX-14PQA-0011-R1b-SM-6EU1G 50-59 years, female 64.7
GTEX-1E2YA-0011-R1b-SM-CJI29 50-59 years, male 64.0
GTEX-16NPV-0011-R1b-SM-7MGVZ 50-59 years, female 58.2
GTEX-PWO3-0011-R1A-SM-2I5EW 60-69 years, female 56.5
GTEX-1A32A-0011-R1a-SM-7P8SQ 50-59 years, female 55.6
GTEX-16GPK-0011-R1b-SM-7EWDH 60-69 years, male 54.2
GTEX-13OW8-0011-R1a-SM-5L3HI 60-69 years, male 52.3
GTEX-1C6VQ-0011-R1a-SM-7P8Q2 50-59 years, male 49.0
GTEX-1H4P4-0011-R1b-SM-CL54V 50-59 years, male 48.8
GTEX-NPJ8-0011-R1a-SM-33HCB 40-49 years, male 48.4
GTEX-17EVQ-0011-R1a-SM-7189S 70-79 years, male 47.9
GTEX-11TUW-0011-R1a-SM-DO92S 60-69 years, male 47.7
GTEX-14E7W-0011-R1b-SM-5YYAT 70-79 years, male 47.3
GTEX-13RTJ-0011-R1a-SM-5O9D9 60-69 years, male 46.3
GTEX-UTHO-0011-R1A-SM-3GIJO 60-69 years, male 45.8
GTEX-1BAJH-0011-R1a-SM-7P8SV 70-79 years, male 43.8
GTEX-11ZTS-0011-R1a-SM-5BC71 60-69 years, female 42.7
GTEX-13OW5-0011-R1b-SM-5L3GE 60-69 years, male 42.6
GTEX-QVUS-0011-R1A-SM-3GAD2 60-69 years, female 41.0
GTEX-183WM-0011-R1a-SM-718A8 70-79 years, female 39.5
GTEX-1I1GV-0011-R1a-SM-CL559 60-69 years, male 38.2
GTEX-13JVG-0011-R1a-SM-5KM32 60-69 years, male 37.1
GTEX-11ZVC-0011-R1b-SM-5BC6M 50-59 years, female 35.9
GTEX-13NZA-0011-R1b-SM-5LUAF 60-69 years, male 34.0
GTEX-1H23P-0011-R1a-SM-ACKVC 60-69 years, male 29.3
GTEX-1CB4J-0011-R1a-SM-9WG64 60-69 years, male 25.5
GTEX-XMD1-0011-R1A-SM-4AT4C 60-69 years, male 25.4
GTEX-18A6Q-0011-R1b-SM-731DI 60-69 years, male 25.1
GTEX-X4EP-0011-R1A-SM-3P624 60-69 years, female 24.7
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

156.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 156.4
FF:10169-103B7 60 years, female 174.4
FF:10153-102I9 76 years, female 138.3

HIPPOCAMPAL FORMATION - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

144.5
Pig sample Sample description nTPM
Subiculum
nTPM: 80.8
Samples: 4

Max nTPM: 119.7
Min nTPM: 64.4
Sample A Female 119.7
Sample B Female 69.4
Sample C Male 64.4
Sample D Male 69.5
Dorsal hippocampus
nTPM: 144.5
Samples: 4

Max nTPM: 210.8
Min nTPM: 107.9
Sample A Female 210.8
Sample B Female 142.9
Sample C Male 116.3
Sample D Male 107.9
Entorhinal cortex
nTPM: 112.9
Samples: 4

Max nTPM: 134.9
Min nTPM: 91.5
Sample A Female 114.2
Sample B Female 110.9
Sample C Male 134.9
Sample D Male 91.5
Ventral hippocampus
nTPM: 96.5
Samples: 4

Max nTPM: 169.7
Min nTPM: 63.8
Sample A Female 68.4
Sample B Female 63.8
Sample C Male 84.0
Sample D Male 169.7

HIPPOCAMPAL FORMATION - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

235.8
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 189.1
Samples: 4

Max nTPM: 210.9
Min nTPM: 169.7
Sample A Male 210.9
Sample B Male 203.3
Sample C Female 172.4
Sample D Female 169.7
Hippocampal formation
nTPM: 235.9
Samples: 4

Max nTPM: 261.0
Min nTPM: 211.8
Sample A Male 218.7
Sample B Male 251.9
Sample C Female 261.0
Sample D Female 211.8

HIPPOCAMPAL FORMATION - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

13.8
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 13.8
69262326 Antisense, RP_050303_02_A08, Mouse strain C57BL/6J (56 days, male) 13.8

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