HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Low
Neuronal cells: Medium
Mouse brain, Intensity
Hippocampal formationi 		97.073
RNA expressioni
Consensus:30.7 nTPM
HPA Brain:191.6 nTPM
GTEx:30.7 nTPM
FANTOM5:123.2 Scaled Tags Per Million
Pig:258.3 nTPM
Mouse:296.5 nTPM
Allen mouse:10.2 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA003565Antibody CAB005312
Glial cells LowNot detected
Neuronal cells MediumHigh





HIPPOCAMPAL FORMATION - Mouse brain profilei , antibody HPA003565
Hippocampal formation mean intensity 97.073
intensityi
FRONT BACK
Polymorph layer of the dentate gyrus 78.956
Molecular layer of the dentate gyrus 93.467
Granular dentate gyrus 33.461
CA1 - oriens layer 86.697
CA1 - pyramidal layer 52.282
CA1 - radiatum layer 91.076
CA2 - oriens layer 46.798
CA2 - pyramidal layer 25.507
CA2 - radiatum layer 66.257
CA3 - oriens layer 67.329
CA3 - pyramidal layer 44.829
CA3 - radiatum layer 58.717
Stratum lucidum 63.820
Lacunosum moleculare 60.405
Subiculum 81.618

HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max subtype nTPMi 191.6
Sample id Sample description nTPM
Hippocampus
nTPM: 61.1
1898 Male, age 80, left hemisphere 88.4
2621 Female, age 67, right hemisphere 72.9
1855 Male, age 76, left hemisphere 54.5
2148 Female, age 91, left hemisphere 53.6
1911 Female, age 85, right hemisphere 49.3
2529 Female, age 94, left hemisphere 48.2
Dentate gyrus
nTPM: 65.1
1927 Female, age 91, both hemispheres 81.0
2246 Female, age 85, both hemispheres 70.8
2531 Female, age 67, both hemispheres 63.8
2530 Female, age 94, left hemisphere 60.2
2528 Male, age 74, both hemispheres 59.4
2010 Male, age 76, both hemispheres 55.7
Entorhinal gyrus
nTPM: 107.5
2764 Male, age 80, right hemisphere 143.3
1787 Male, age 76, left hemisphere 128.2
2613 Female, age 94, left hemisphere 122.7
1938 Female, age 85, left hemisphere 108.6
2686 Male, age 75, right hemisphere 83.1
2117 Female, age 91, right hemisphere 59.1
Hippocampus, CA1
nTPM: 70.7
2749 Male, age 80, left hemisphere 104.7
1873 Female, age 85, both hemispheres 70.7
2082 Female, age 91, right hemisphere 70.6
2527 Male, age 74, both hemispheres 60.6
2045 Male, age 76, both hemispheres 47.1
Hippocampus, CA2
nTPM: 86.0
1940 Female, age 85, left hemisphere 129.3
1892 Male, age 76, both hemispheres 96.5
2113 Female, age 91, right hemisphere 81.3
1963 Male, age 80, left hemisphere 79.0
2437 Female, age 94, left hemisphere 69.5
2249 Male, age 74, both hemispheres 60.6
Hippocampus, CA3
nTPM: 68.8
2137 Male, age 80, left hemisphere 95.7
1867 Male, age 76, both hemispheres 72.4
2436 Male, age 74, both hemispheres 66.2
2620 Female, age 94, left hemisphere 61.2
1891 Female, age 85, both hemispheres 60.2
2861 Female, age 67, both hemispheres 57.3
Parahippocampal cortex
nTPM: 125.0
1850 Male, age 80, both hemispheres 181.4
2693 Female, age 94, both hemispheres 151.7
1933 Female, age 85, both hemispheres 137.2
2532 Female, age 72, left hemisphere 136.4
1990 Female, age 91, right hemisphere 130.8
2250 Female, age 67, right hemisphere 130.3
2245 Female, age 91, both hemispheres 124.0
2622 Female, age 67, right hemisphere 95.2
2018 Male, age 76, both hemispheres 91.2
2692 Male, age 74, both hemispheres 72.2
Perirhinal gyrus
nTPM: 191.6
2521 Female, age 94, right hemisphere 224.6
1794 Male, age 80, right hemisphere 204.6
1847 Female, age 91, left hemisphere 202.9
1841 Female, age 85, right hemisphere 200.2
2848 Male, age 76, right hemisphere 125.8
Subiculum
nTPM: 69.7
1977 Female, age 85, both hemispheres 108.0
1901 Male, age 80, both hemispheres 83.3
2619 Male, age 74, both hemispheres 78.2
2042 Male, age 76, both hemispheres 54.6
2729 Female, age 91, right hemisphere 48.0
2438 Female, age 94, left hemisphere 46.2

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Max subtype nTPMi 30.7
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 30.7
Samples: 197

Max nTPM: 145.6
Min nTPM: 5.8
Std nTPM: 24.7
Median nTPM: 22.1
GTEX-145MH-0011-R1b-SM-5PNWY 50-59 years, male 145.6
GTEX-RNOR-0011-R1A-SM-CNNP5 50-59 years, female 141.0
GTEX-1ICLZ-0011-R1b-SM-A9SM3 60-69 years, male 127.1
GTEX-WL46-0011-R1A-SM-3LK6M 50-59 years, male 125.6
GTEX-R55E-0011-R1A-SM-2TC6N 20-29 years, male 113.3
GTEX-16YQH-0011-R1a-SM-7LT8R 30-39 years, male 111.8
GTEX-14LLW-0011-R1a-SM-5ZZVD 70-79 years, female 95.2
GTEX-P44G-0011-R1A-SM-2I3FE 30-39 years, male 95.2
GTEX-WWYW-0011-R1A-SM-3TW8G 50-59 years, female 91.0
GTEX-13FLW-0011-R1b-SM-5LZX2 50-59 years, male 88.4
GTEX-1EWIQ-0011-R1a-SM-9OSX7 70-79 years, female 85.0
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 123.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 123.2
FF:10169-103B7 60 years, female 147.4
FF:10153-102I9 76 years, female 98.9

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Max subtype nTPMi 258.3
Pig sample Sample description nTPM
Subiculum
nTPM: 168.9
Samples: 4

Max nTPM: 198.1
Min nTPM: 138.2
Sample A Female 198.1
Sample B Female 166.1
Sample C Male 138.2
Sample D Male 173.0
Dorsal hippocampus
nTPM: 182.6
Samples: 4

Max nTPM: 198.3
Min nTPM: 170.0
Sample A Female 173.8
Sample B Female 188.2
Sample C Male 170.0
Sample D Male 198.3
Entorhinal cortex
nTPM: 258.3
Samples: 4

Max nTPM: 322.9
Min nTPM: 220.2
Sample A Female 267.3
Sample B Female 322.9
Sample C Male 220.2
Sample D Male 222.7
Ventral hippocampus
nTPM: 128.8
Samples: 4

Max nTPM: 170.9
Min nTPM: 106.1
Sample A Female 106.1
Sample B Female 111.2
Sample C Male 127.1
Sample D Male 170.9

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Max subtype nTPMi 296.5
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 296.5
Samples: 4

Max nTPM: 322.2
Min nTPM: 254.6
Sample A Male 303.3
Sample B Male 322.2
Sample C Female 254.6
Sample D Female 305.9
Hippocampal formation
nTPM: 218.8
Samples: 4

Max nTPM: 227.5
Min nTPM: 203.6
Sample A Male 221.4
Sample B Male 222.7
Sample C Female 227.5
Sample D Female 203.6

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max subtype Expression energyi 10.2
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 10.2
73521001 Antisense, RP_051101_02_H08, Mouse strain C57BL/6J (56 days, male) 10.2
69782682 Antisense, RP_050505_03_E06, Mouse strain C57BL/6J (56 days, male) 10.1

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