We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
112.4
Sample id
Sample description
nTPM
Anterior cochlear nucleus, ventral nTPM: 62.0
2188
Female, age 91, both hemispheres
74.3
1984
Male, age 76, both hemispheres
68.1
2301
Female, age 85, both hemispheres
54.0
2090
Male, age 80, both hemispheres
51.6
Dorsal cochlear nucleus nTPM: 47.7
2187
Female, age 91, both hemispheres
56.8
2058
Male, age 76, both hemispheres
48.0
2370
Male, age 61, both hemispheres
45.9
2378
Male, age 80, both hemispheres
45.7
2802
Male, age 74, right hemisphere
41.9
Dorsal tegmental nucleus nTPM: 51.3
2326
Male, age 74, both hemispheres
54.3
2358
Male, age 61, both hemispheres
52.0
2083
Male, age 80, both hemispheres
50.1
1936
Male, age 76, left hemisphere
48.7
Dorsolateral tegmental area nTPM: 50.0
2360
Male, age 74, both hemispheres
61.7
2654
Male, age 80, both hemispheres
52.3
2751
Female, age 85, both hemispheres
48.1
2141
Male, age 76, both hemispheres
44.3
2337
Male, age 61, both hemispheres
43.5
Kolliker-Fuse nucleus nTPM: 63.7
2793
Female, age 91, left hemisphere
76.4
2163
Male, age 80, both hemispheres
59.0
2315
Male, age 76, right hemisphere
55.7
Lateral lemniscal nuclei nTPM: 104.5
2169
Male, age 76, both hemispheres
137.4
2036
Male, age 80, both hemispheres
114.4
2746
Female, age 85, left hemisphere
99.3
2453
Male, age 74, right hemisphere
95.9
2320
Female, age 91, left hemisphere
75.4
Lateral parabrachial nucleus nTPM: 71.5
2139
Female, age 85, right hemisphere
111.1
2013
Male, age 80, both hemispheres
77.8
2790
Male, age 61, both hemispheres
53.9
2792
Male, age 76, both hemispheres
43.3
Lateral vestibular nucleus nTPM: 49.8
2184
Male, age 76, both hemispheres
53.0
2311
Male, age 80, both hemispheres
46.7
Locus coeruleus nTPM: 62.7
2123
Female, age 91, both hemispheres
80.8
2014
Male, age 55, unknown
67.0
2720
Male, age 74, both hemispheres
66.4
2788
Male, age 74, unknown
66.0
2162
Male, age 80, both hemispheres
56.0
2317
Female, age 72, unknown
53.4
1980
Male, age 76, both hemispheres
49.4
Medial parabrachial nucleus nTPM: 53.5
2854
Male, age 80, both hemispheres
71.5
2170
Female, age 91, both hemispheres
54.8
2463
Female, age 85, right hemisphere
50.3
2156
Male, age 61, both hemispheres
48.8
2786
Male, age 76, both hemispheres
42.0
Medial periolivary nuclei nTPM: 94.1
2063
Male, age 76, both hemispheres
132.1
2171
Female, age 85, both hemispheres
116.3
2791
Male, age 74, right hemisphere
92.2
2458
Female, age 91, both hemispheres
67.8
2081
Male, age 80, both hemispheres
62.1
Motor facial nucleus nTPM: 92.1
2062
Male, age 76, both hemispheres
140.0
2365
Male, age 74, right hemisphere
108.9
2327
Male, age 80, both hemispheres
90.1
2697
Female, age 85, both hemispheres
89.3
2795
Female, age 91, both hemispheres
66.7
2126
Male, age 61, both hemispheres
57.9
Motor trigeminal nucleus nTPM: 66.6
2079
Male, age 80, both hemispheres
100.6
2560
Male, age 74, both hemispheres
80.1
2321
Female, age 91, both hemispheres
56.1
2335
Male, age 61, both hemispheres
50.6
2309
Male, age 76, both hemispheres
45.8
Nuclei of the trapezoid body nTPM: 112.3
2159
Male, age 61, both hemispheres
158.4
2735
Female, age 85, both hemispheres
127.7
1983
Male, age 76, both hemispheres
121.7
2166
Male, age 80, both hemispheres
83.0
2368
Female, age 91, both hemispheres
70.5
Nucleus raphe magnus nTPM: 112.4
2160
Male, age 61, both hemispheres
175.1
2172
Female, age 85, both hemispheres
132.5
2455
Male, age 74, both hemispheres
118.7
2328
Male, age 80, both hemispheres
86.7
2051
Male, age 76, both hemispheres
86.4
2459
Female, age 91, both hemispheres
75.2
Paramedian reticular nucleus nTPM: 68.2
2050
Female, age 85, both hemispheres
102.9
2313
Male, age 61, both hemispheres
63.0
2057
Male, age 80, both hemispheres
58.9
2052
Male, age 76, both hemispheres
48.1
Pedunculopontine tegmental nucleus nTPM: 53.7
2338
Male, age 61, both hemispheres
61.5
1921
Female, age 85, both hemispheres
51.1
2334
Male, age 80, both hemispheres
48.5
Pontine nuclei nTPM: 110.6
2727
Male, age 61, right hemisphere
151.9
1863
Male, age 55, unknown
150.5
2787
Female, age 85, both hemispheres
131.8
2109
Female, age 72, unknown
119.1
1968
Male, age 76, left hemisphere
109.8
2454
Male, age 74, left hemisphere
85.0
2115
Male, age 80, left hemisphere
72.0
2319
Female, age 91, both hemispheres
64.4
Pontine raphe nucleus nTPM: 78.0
2122
Female, age 85, midline
110.5
2853
Male, age 76, midline
45.4
Posteroventral cochlear nucleus nTPM: 53.2
2752
Female, age 85, both hemispheres
70.0
2135
Female, age 91, both hemispheres
54.9
2070
Male, age 76, both hemispheres
54.8
2341
Male, age 80, both hemispheres
45.0
2371
Male, age 61, both hemispheres
41.3
Principal sensory trigeminal nucleus nTPM: 100.5
2158
Male, age 61, both hemispheres
168.3
2008
Male, age 80, left hemisphere
116.2
2367
Female, age 91, left hemisphere
69.7
2324
Male, age 76, both hemispheres
47.8
Reticular pontine nucleus, caudal nTPM: 79.4
2092
Male, age 76, both hemispheres
101.5
2332
Male, age 80, right hemisphere
94.1
2457
Female, age 91, both hemispheres
63.5
2559
Male, age 74, both hemispheres
58.4
Reticular pontine nucleus, oral nTPM: 72.1
2361
Male, age 74, both hemispheres
104.9
2012
Female, age 85, both hemispheres
97.8
2366
Female, age 91, both hemispheres
63.6
1939
Male, age 80, both hemispheres
49.7
2167
Male, age 76, both hemispheres
44.3
Reticulotegmental nucleus nTPM: 64.8
2325
Male, age 76, both hemispheres
86.0
2452
Male, age 74, both hemispheres
60.5
2333
Male, age 80, both hemispheres
58.6
2322
Female, age 91, both hemispheres
54.1
Spinal trigeminal nucleus, oral nTPM: 56.6
2737
Female, age 85, both hemispheres
62.3
1978
Male, age 76, both hemispheres
57.6
2164
Male, age 80, both hemispheres
50.0
Subcoeruleus area nTPM: 68.3
2089
Male, age 76, left hemisphere
96.9
1958
Male, age 80, both hemispheres
82.5
2323
Female, age 91, left hemisphere
61.7
2451
Male, age 74, both hemispheres
59.1
2369
Female, age 85, left hemisphere
41.2
Superior olive nTPM: 103.1
1875
Female, age 85, both hemispheres
138.6
2020
Male, age 76, both hemispheres
109.4
2364
Male, age 74, right hemisphere
100.5
2561
Female, age 91, both hemispheres
84.5
2329
Male, age 80, right hemisphere
82.4
Ventral periolivary nuclei nTPM: 105.6
2130
Female, age 85, both hemispheres
117.9
2023
Male, age 76, both hemispheres
108.7
2165
Male, age 80, both hemispheres
100.8
2794
Female, age 91, left hemisphere
95.2
Ventrolateral tegmental area, A5 NE cell group nTPM: 74.4
1959
Male, age 76, both hemispheres
102.0
2449
Male, age 74, both hemispheres
100.4
2161
Male, age 80, both hemispheres
79.1
2840
Female, age 85, both hemispheres
63.0
2456
Female, age 91, both hemispheres
55.2
2359
Male, age 61, both hemispheres
46.8
PONS - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
267.7
Pig sample
Sample description
nTPM
Pons nTPM: 267.7
Samples: 4
Max nTPM: 560.4
Min nTPM: 127.9
Sample A
Female
560.4
Sample B
Female
127.9
Sample C
Male
139.3
Sample D
Male
243.1
PONS - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.
The Human Protein Atlas project is funded
