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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:127.2 nTPM
HPA Brain:113.6 nTPM
GTEx:127.2 nTPM
FANTOM5:109.9 Scaled Tags Per Million
Pig:75.7 nTPM
Mouse:139.4 nTPM
Allen mouse:6.4 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

113.6
Sample id Sample description nTPM
Amygdala
nTPM: 105.2
2695 Female, age 67, right hemisphere 127.4
2814 Male, age 76, right hemisphere 111.4
2514 Male, age 75, right hemisphere 103.0
2517 Female, age 94, left hemisphere 95.0
1987 Female, age 91, left hemisphere 89.3
Basal amygdala
nTPM: 102.7
2609 Male, age 75, right hemisphere 117.8
2827 Female, age 67, right hemisphere 113.8
2685 Female, age 94, left hemisphere 102.0
2243 Female, age 91, right hemisphere 97.8
2110 Male, age 80, left hemisphere 93.8
1955 Male, age 76, both hemispheres 91.0
Central amygdala
nTPM: 110.6
2826 Female, age 94, left hemisphere 143.7
2515 Male, age 75, right hemisphere 113.6
1905 Male, age 76, both hemispheres 106.3
2239 Male, age 80, left hemisphere 95.7
2701 Female, age 91, right hemisphere 93.5
Corticomedial amygdala
nTPM: 91.7
2428 Male, age 75, right hemisphere 110.4
2829 Male, age 80, left hemisphere 100.3
2535 Female, age 67, right hemisphere 89.8
2242 Female, age 91, right hemisphere 88.1
2429 Female, age 94, left hemisphere 83.1
2240 Male, age 76, both hemispheres 78.4
Lateral amygdala
nTPM: 113.6
2830 Female, age 67, right hemisphere 144.2
2516 Male, age 75, right hemisphere 119.5
2534 Female, age 94, left hemisphere 114.4
1883 Male, age 76, both hemispheres 105.6
2256 Male, age 80, left hemisphere 104.0
2255 Female, age 91, right hemisphere 94.0

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

127.2
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 127.2
Samples: 152

Max nTPM: 295.7
Min nTPM: 54.0
Std nTPM: 32.6
Median nTPM: 122.5
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 295.7
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 244.8
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 226.1
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 221.6
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 206.9
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 192.6
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 187.4
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 183.4
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 183.1
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 181.7
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 171.8
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 166.6
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 166.3
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 165.2
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 164.1
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 163.5
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 163.2
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 161.7
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 160.8
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 159.1
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 158.0
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 156.7
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 155.5
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 152.0
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 150.5
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 149.6
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 147.6
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 147.2
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 147.2
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 146.7
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 146.1
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 145.9
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 145.5
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 145.1
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 143.0
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 142.4
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 142.2
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 141.2
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 141.0
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 140.5
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 140.0
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 139.9
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 139.4
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 139.1
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 137.9
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 137.3
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 135.7
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 135.5
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 134.2
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 134.1
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 133.2
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 132.6
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 132.4
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 132.4
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 131.8
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 131.4
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 130.7
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 130.4
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 129.7
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 129.6
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 129.3
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 129.3
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 128.7
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 128.4
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 127.6
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 127.2
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 126.9
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 126.8
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 125.9
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 125.7
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 125.1
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 125.0
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 124.8
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 124.5
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 123.9
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 123.4
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 121.5
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 121.2
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 120.7
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 120.6
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 120.3
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 120.2
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 120.1
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 120.0
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 119.6
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 119.3
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 119.2
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 118.9
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 118.9
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 118.0
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 117.6
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 117.1
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 116.6
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 116.4
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 116.2
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 114.2
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 114.1
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 113.3
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 113.2
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 112.6
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 111.8
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 110.8
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 110.7
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 110.7
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 110.4
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 109.6
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 109.4
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 109.0
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 107.6
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 107.5
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 107.3
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 107.3
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 106.8
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 106.2
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 105.8
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 104.1
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 103.5
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 103.2
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 102.6
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 102.2
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 101.7
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 101.6
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 101.4
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 100.9
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 100.3
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 100.1
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 99.3
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 99.1
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 98.4
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 98.4
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 98.3
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 97.9
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 96.1
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 96.0
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 95.8
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 94.5
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 94.2
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 93.7
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 93.6
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 92.4
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 92.2
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 91.9
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 91.2
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 85.9
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 85.8
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 83.2
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 82.9
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 81.5
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 78.4
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 77.8
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 75.3
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 54.0
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

109.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 109.9
FF:10151-102I7 76 years, female 109.9

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

75.7
Pig sample Sample description nTPM
Amygdala
nTPM: 75.7
Samples: 4

Max nTPM: 106.5
Min nTPM: 61.7
Sample A Female 106.5
Sample B Female 63.5
Sample C Male 71.0
Sample D Male 61.7

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

139.4
Mouse sample Sample description nTPM
Amygdala
nTPM: 139.4
Samples: 4

Max nTPM: 150.3
Min nTPM: 128.9
Sample A Male 128.9
Sample B Male 142.3
Sample C Female 150.3
Sample D Female 136.0

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

6.4
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 6.4
72283773 Antisense, RP_051019_02_B04, Mouse strain C57BL/6J (56 days, male) 11.9
74736207 Antisense, RP_060302_02_E06, Mouse strain C57BL/6J (56 days, male) 0.9

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