MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:137.1 nTPM
HPA Brain:129.6 nTPM
GTEx:137.1 nTPM
FANTOM5:113.2 Scaled Tags Per Million
Pig:107.7 nTPM
Mouse:114.2 nTPM
Allen mouse:3.7 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 129.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 114.9
2586 Male, age 75, left hemisphere 159.1
2828 Female, age 72, unknown 125.7
2666 Male, age 74, left hemisphere 118.4
1833 Male, age 53, unknown 112.2
2019 Male, age 18, unknown 110.8
2411 Female, age 72, unknown 110.8
1830 Male, age 51, unknown 107.3
1827 Male, age 72, unknown 106.4
1870 Female, age 42, unknown 105.9
2219 Male, age 76, both hemispheres 92.8
Dorsal raphe nucleus
nTPM: 111.3
1828 Male, age 53, unknown 120.0
2047 Male, age 72, unknown 118.5
2750 Male, age 76, both hemispheres 111.0
2016 Female, age 72, unknown 103.9
2298 Female, age 72, unknown 103.0
Inferior colliculus
nTPM: 101.9
2849 Male, age 72, unknown 105.6
1890 Male, age 53, unknown 102.0
1848 Female, age 42, unknown 101.7
2097 Female, age 72, unknown 98.1
Median raphe nucleus
nTPM: 108.0
2220 Male, age 76, midline 108.0
Periaquaductal grey, anterior
nTPM: 106.6
2502 Female, age 75, unknown 111.7
1795 Male, age 51, unknown 106.0
1947 Male, age 18, unknown 102.0
Periaquaductal grey, dorsal
nTPM: 98.3
1840 Male, age 53, unknown 102.7
1831 Male, age 72, unknown 97.4
2850 Male, age 76, both hemispheres 96.5
2464 Female, age 72, unknown 96.4
Periaquaductal grey, lateral
nTPM: 92.8
2053 Male, age 18, unknown 99.4
2140 Male, age 76, both hemispheres 93.4
2272 Male, age 74, both hemispheres 85.7
Pretectal area
nTPM: 105.5
1817 Female, age 42, unknown 125.4
1815 Male, age 53, unknown 117.1
2007 Male, age 72, unknown 115.5
1816 Male, age 51, unknown 109.6
2407 Male, age 75, both hemispheres 108.8
2667 Female, age 75, unknown 105.1
1944 Female, age 72, unknown 103.9
2825 Male, age 18, unknown 103.4
2316 Male, age 76, right hemisphere 93.4
2273 Male, age 74, both hemispheres 90.7
2224 Female, age 72, unknown 86.9
Red nucleus
nTPM: 117.9
2588 Male, age 74, left hemisphere 124.6
2584 Male, age 75, left hemisphere 124.5
1821 Female, age 72, unknown 123.8
2769 Male, age 72, unknown 123.0
2503 Female, age 72, unknown 118.4
2227 Male, age 72, unknown 118.2
1865 Male, age 51, unknown 116.0
2785 Male, age 18, unknown 115.9
1954 Female, age 42, unknown 114.7
1904 Male, age 53, unknown 114.3
2823 Male, age 76, right hemisphere 114.3
2725 Female, age 75, unknown 106.7
Substantia nigra
nTPM: 129.6
1916 Female, age 42, unknown 167.9
1851 Male, age 51, unknown 146.6
2665 Male, age 74, both hemispheres 140.9
2699 Male, age 18, unknown 137.2
2583 Male, age 75, right hemisphere 131.9
2409 Female, age 72, unknown 119.8
2590 Female, age 75, unknown 114.9
2241 Male, age 72, unknown 114.4
1889 Female, age 72, unknown 112.4
1941 Male, age 53, unknown 110.2
Superior colliculus
nTPM: 110.2
2664 Male, age 75, both hemispheres 135.6
2668 Female, age 75, unknown 128.7
2587 Male, age 74, left hemisphere 109.6
1796 Male, age 53, unknown 108.1
1839 Male, age 51, unknown 107.9
2261 Male, age 18, unknown 105.9
1995 Male, age 72, unknown 104.0
2087 Female, age 72, unknown 102.6
1913 Female, age 42, unknown 101.5
1895 Male, age 76, right hemisphere 98.6
Ventral tegmental area
nTPM: 119.9
1915 Female, age 42, unknown 128.9
2410 Female, age 72, unknown 128.0
2218 Male, age 76, both hemispheres 124.2
2021 Male, age 53, unknown 116.9
2223 Female, age 72, unknown 110.8
1942 Male, age 51, unknown 110.3

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 137.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 137.1
Samples: 139

Max nTPM: 258.7
Min nTPM: 79.0
Std nTPM: 30.0
Median nTPM: 132.3
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 258.7
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 239.7
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 230.9
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 220.4
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 197.4
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 193.9
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 182.0
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 181.1
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 180.2
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 179.4
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 178.9
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 113.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 113.2
FF:10158-103A5 76 years, female 113.2

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 107.7
Pig sample Sample description nTPM
Substantia nigra
nTPM: 96.6
Samples: 4

Max nTPM: 119.1
Min nTPM: 79.9
Sample A Female 119.1
Sample B Female 79.9
Sample C Male 100.8
Sample D Male 86.6
Midbrain
nTPM: 103.1
Samples: 4

Max nTPM: 111.8
Min nTPM: 94.4
Sample A Female 111.8
Sample B Female 94.4
Sample C Male 110.5
Sample D Male 95.8
Periaqueductal gray
nTPM: 84.2
Samples: 3

Max nTPM: 93.8
Min nTPM: 74.3
Sample B Female 84.4
Sample C Male 93.8
Sample D Male 74.3
Superior colliculi
nTPM: 107.7
Samples: 4

Max nTPM: 125.8
Min nTPM: 84.7
Sample A Female 125.8
Sample B Female 84.7
Sample C Male 113.3
Sample D Male 106.8

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 114.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 114.2
Samples: 4

Max nTPM: 121.6
Min nTPM: 108.0
Sample A Male 121.6
Sample B Male 109.4
Sample C Female 108.0
Sample D Female 117.7

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 3.7
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 3.7
72283773 Antisense, RP_051019_02_B04, Mouse strain C57BL/6J (56 days, male) 6.8
74736207 Antisense, RP_060302_02_E06, Mouse strain C57BL/6J (56 days, male) 0.5

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