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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
h
m
l
n
Ganglion cells :
Not detected
Inner nuclear layer:
Not detected
Inner plexiform layer:
Not detected
Limiting membrane:
Not detected
Nerve fiber layer:
Not detected
Outer plexiform layer:
Not detected
Photoreceptor cells:
High
Pigment epithelial cells:
Not detected
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
1150.6
nTPM
GTEx:
1150.6
nTPM
FANTOM5:
187.3
Scaled Tags Per Million
Pig:
211.3
nTPM
Mouse:
3354.1
nTPM
RETINA - Extended tissue profilei
For selected proteins extended tissue profiling is performed in addition to standard tissue microarrays. The section below contains results from the extended profiling.
, antibody HPA028910
Pigment epithelial cells
Not detected
Photoreceptor cells
High
Limiting membrane
Not detected
Outer plexiform layer
Not detected
Inner nuclear layer
Not detected
Inner plexiform layer
Not detected
Ganglion cells
Not detected
Nerve fiber layer
Not detected
RETINA - Extended tissue profilei
For selected proteins extended tissue profiling is performed in addition to standard tissue microarrays. The section below contains results from the extended profiling.
, antibody HPA073279
Pigment epithelial cells
Not detected
Photoreceptor cells
High
Limiting membrane
Not detected
Outer plexiform layer
Medium
Inner nuclear layer
Not detected
Inner plexiform layer
Not detected
Ganglion cells
Not detected
Nerve fiber layer
Not detected
RETINA - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
1150.6
GTEx sample id
Sample description
nTPM
Retina Average nTPM: 1150.6
Samples: 105
Max nTPM: 2468.8
Min nTPM: 406.2
Std nTPM: 357.6
Median nTPM:
218_1
71 years, female
2468.8
354_1
81 years, female
1812.4
447_1
81 years, male
1791.4
352_1
62 years, male
1777.7
319_1
81 years, male
1758.5
237_1
82 years, male
1745.0
6_1
73 years, female
1733.0
375_1
74 years, female
1724.4
172_1
72 years, female
1703.8
321_1
62 years, female
1654.9
386_1
76 years, male
1628.3
379_1
60 years, male
1606.8
322_1
76 years, male
1595.3
163_1
78 years, male
1590.4
384_1
83 years, male
1583.5
355_1
70 years, female
1564.1
394_1
75 years, female
1554.2
243_1
75 years, male
1506.5
389_1
86 years, female
1501.0
377_1
82 years, female
1491.4
350_1
84 years, female
1448.4
189_1
76 years, male
1446.6
376_1
75 years, female
1436.4
347_1
72 years, male
1386.4
246_1
77 years, male
1384.2
35_1
74 years, female
1381.2
349_1
83 years, male
1377.7
425_1
59 years, female
1375.8
353_1
82 years, female
1345.7
286_1
68 years, female
1342.5
173_1
67 years, male
1334.8
320_1
89 years, female
1332.2
229_1
69 years, female
1322.8
293_1
68 years, female
1307.4
316_1
62 years, male
1307.4
356_1
87 years, female
1301.4
503_1
68 years, male
1295.2
317_1
60 years, male
1289.7
307_1
66 years, female
1260.2
351_1
91 years, male
1253.0
177_1
74 years, male
1231.6
405_1
91 years, male
1230.5
251_1
78 years, male
1225.0
318_1
68 years, male
1218.7
406_1
79 years, male
1202.2
396_1
62 years, male
1180.4
2_1
77 years, female
1168.0
266_1
85 years, male
1148.2
480_1
63 years, male
1144.5
526_1
61 years, male
1140.1
404_1
82 years, female
1124.0
335_1
73 years, female
1103.6
265_1
87 years, male
1096.5
4_1
88 years, female
1069.4
99_1
64 years, male
1065.1
217_1
76 years, male
1062.8
153_1
70 years, female
1062.6
468_1
89 years, male
1060.8
452_1
88 years, female
1058.7
311_1
78 years, male
1051.4
291_1
76 years, male
1044.9
292_1
71 years, male
1015.3
137_1
83 years, male
1012.3
41_1
94 years, female
1005.0
518_1
75 years, female
1003.5
517_1
88 years, male
1003.3
145_1
84 years, male
1001.8
348_1
84 years, male
999.5
324_1
76 years, male
997.8
115_1
83 years, male
991.4
495_1
57 years, female
990.7
264_1
73 years, female
983.7
42_1
85 years, male
974.0
17_1
71 years, male
965.6
295_1
61 years, female
959.1
254_1
77 years, female
946.5
126_1
63 years, male
927.2
415_1
77 years, female
926.5
308_1
70 years, female
922.0
313_1
79 years, female
914.9
9_1
66 years, female
902.9
315_1
62 years, female
869.0
142_1
61 years, female
867.9
506_1
65 years, male
866.1
499_1
55 years, female
862.6
117_1
61 years, male
845.1
414_1
84 years, female
843.2
120_1
70 years, female
829.7
288_1
66 years, female
792.8
139_1
64 years, female
789.1
162_1
79 years, female
782.5
18_1
88 years, male
750.0
314_1
67 years, male
722.1
43_1
64 years, female
703.5
109_1
81 years, female
694.3
466_1
57 years, female
693.2
32_1
67 years, male
690.7
81_1
67 years, male
684.2
490_1
67 years, female
663.9
119_1
70 years, female
602.8
89_1
63 years, male
591.5
413_1
59 years, female
528.7
501_1
88 years, male
442.2
149_1
88 years, male
440.2
491_1
89 years, female
406.2
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RETINA - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
The Human Protein Atlas project is funded
