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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:361.0 nTPM
HPA Brain:123.4 nTPM
GTEx:361.0 nTPM
FANTOM5:237.5 Scaled Tags Per Million
Pig:85.7 nTPM
Mouse:335.8 nTPM
Allen mouse:24.6 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

123.4
Sample id Sample description nTPM
Amygdala
nTPM: 123.4
2695 Female, age 67, right hemisphere 161.1
2814 Male, age 76, right hemisphere 141.7
2514 Male, age 75, right hemisphere 109.1
2517 Female, age 94, left hemisphere 108.3
1987 Female, age 91, left hemisphere 96.9
Basal amygdala
nTPM: 103.2
2609 Male, age 75, right hemisphere 122.3
2827 Female, age 67, right hemisphere 120.2
2685 Female, age 94, left hemisphere 104.2
1955 Male, age 76, both hemispheres 99.0
2110 Male, age 80, left hemisphere 95.8
2243 Female, age 91, right hemisphere 77.7
Central amygdala
nTPM: 117.6
2826 Female, age 94, left hemisphere 158.7
2515 Male, age 75, right hemisphere 125.5
1905 Male, age 76, both hemispheres 120.8
2239 Male, age 80, left hemisphere 95.7
2701 Female, age 91, right hemisphere 87.4
Corticomedial amygdala
nTPM: 92.7
2428 Male, age 75, right hemisphere 118.8
2240 Male, age 76, both hemispheres 102.9
2429 Female, age 94, left hemisphere 94.4
2829 Male, age 80, left hemisphere 90.7
2535 Female, age 67, right hemisphere 76.4
2242 Female, age 91, right hemisphere 72.8
Lateral amygdala
nTPM: 118.2
2830 Female, age 67, right hemisphere 154.0
2516 Male, age 75, right hemisphere 150.4
1883 Male, age 76, both hemispheres 119.9
2534 Female, age 94, left hemisphere 112.5
2256 Male, age 80, left hemisphere 91.8
2255 Female, age 91, right hemisphere 80.7

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

361.0
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 361.0
Samples: 152

Max nTPM: 965.1
Min nTPM: 22.2
Std nTPM: 112.9
Median nTPM: 342.7
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 965.1
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 651.9
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 648.4
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 628.9
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 626.9
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 623.3
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 585.3
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 529.4
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 528.4
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 516.2
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 502.7
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 499.5
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 493.3
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 492.3
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 491.2
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 490.6
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 484.9
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 477.5
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 472.5
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 471.0
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 471.0
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 469.4
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 460.9
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 459.9
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 457.1
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 456.3
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 455.9
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 453.2
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 449.2
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 449.1
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 444.8
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 442.2
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 440.4
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 436.3
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 436.1
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 435.3
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 428.8
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 426.2
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 426.0
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 425.6
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 425.3
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 421.2
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 421.1
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 413.4
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 406.8
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 401.9
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 401.5
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 400.3
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 399.2
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 398.1
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 397.0
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 394.0
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 392.4
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 391.9
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 385.8
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 384.1
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 380.6
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 380.5
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 378.7
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 377.7
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 376.3
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 373.4
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 370.5
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 367.0
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 365.9
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 361.8
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 361.2
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 356.5
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 356.4
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 353.5
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 352.5
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 352.2
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 351.9
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 350.4
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 349.0
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 344.6
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 340.7
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 339.3
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 339.1
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 336.3
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 332.2
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 331.8
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 330.9
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 330.8
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 328.0
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 327.5
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 325.0
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 324.6
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 323.7
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 322.4
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 321.6
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 321.2
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 320.5
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 319.8
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 319.5
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 316.7
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 314.7
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 312.4
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 311.7
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 310.8
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 309.6
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 308.9
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 307.0
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 306.1
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 305.9
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 300.5
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 300.3
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 298.7
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 294.4
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 293.8
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 291.5
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 290.4
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 288.1
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 286.7
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 284.8
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 280.5
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 280.4
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 279.5
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 276.9
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 276.1
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 275.9
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 272.9
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 266.8
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 265.8
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 263.7
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 261.4
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 259.0
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 256.3
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 256.0
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 256.0
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 254.7
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 251.1
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 250.4
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 243.1
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 239.4
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 234.8
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 234.2
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 232.4
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 231.3
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 227.0
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 225.6
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 222.5
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 221.7
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 220.4
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 220.2
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 219.9
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 212.1
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 210.0
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 209.1
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 205.4
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 197.2
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 22.2
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

237.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 237.5
FF:10151-102I7 76 years, female 237.5

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

85.7
Pig sample Sample description nTPM
Amygdala
nTPM: 85.8
Samples: 4

Max nTPM: 101.9
Min nTPM: 71.9
Sample A Female 101.9
Sample B Female 87.7
Sample C Male 71.9
Sample D Male 81.5

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

335.8
Mouse sample Sample description nTPM
Amygdala
nTPM: 335.8
Samples: 4

Max nTPM: 342.9
Min nTPM: 326.7
Sample A Male 326.7
Sample B Male 342.5
Sample C Female 342.9
Sample D Female 330.9

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

24.6
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 24.6
68632051 Antisense, RP_050125_01_F03, Mouse strain C57BL/6J (56 days, male) 24.6

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