We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
TAGLN
HPA
RESOURCES
  • TISSUE
  • BRAIN
  • SINGLE CELL
  • SUBCELLULAR
  • CANCER
  • BLOOD
  • CELL LINE
  • STRUCTURE & INTERACTION
ABOUT
  • INTRODUCTION
  • HISTORY
  • ORGANIZATION
  • PUBLICATIONS
  • ANTIBODY SUBMISSION
  • ANTIBODY AVAILABILITY
  • ACKNOWLEDGMENTS
  • CONTACT
NEWS
  • NEWS ARTICLES
  • PRESS ROOM
LEARN
  • DICTIONARY
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
  • METHODS
  • EDUCATIONAL VIDEOS
DATA
  • DOWNLOADABLE DATA
  • PUBLICATION DATA
  • RELEASE HISTORY
HELP
  • ANTIBODY VALIDATION
  • ASSAYS & ANNOTATION
  • DISCLAIMER
  • HELP & FAQ
  • PRIVACY STATEMENT
  • LICENCE & CITATION
Fields »
Search result

Field
Term
Gene name
Class
Subclass
Class
Keyword
Chromosome
External id
Tissue
Cell type
Expression
Antibody panel
Tissue
Main location
Patient ID
Annotation
Tissue
Category
Tau score
Cluster
Reliability
Brain region
Category
Tau score
Brain region
Category
Tau score
Brain region
Category
Tau score
Cluster
Reliability
Tissue
Cell type
Enrichment
Cell type
Category
Tau score
Cell type
Category
Tau score
Cell type
Category
Tau score
Cell lineage
Category
Tau score
Cluster
Cluster
Location
Searches
Location
Cell line
Class
Type
Phase
Reliability
Cancer
Prognosis
Cancer
Category
Cancer
Category
Tau score
Cluster
Variants
Interacting gene (ensg_id)
Type
Number of interactions
Pathway
Category
Score
Score
Score
Validation
Validation
Validation
Validation
Antibodies
Data type
Column


  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • SUBCELL

  • CANCER

  • BLOOD

  • CELL LINE

  • STRUCT & INT

  • TAGLN
TISSUE PRIMARY DATA SMALL INTESTINE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Small intestine
Tissue proteome
Intestine
SMALL INTESTINE - Expression summary
Protein expression
Small intestinei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Endocrine cells: Not detected
Enterocytes: Not detected
Enterocytes - Microvilli: High
Goblet cells: Not detected
Paneth cells: Not detected
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:1888.6 nTPM
HPA:487.1 nTPM
GTEx:1888.6 nTPM
FANTOM5:1404.2 Scaled Tags Per Million

SMALL INTESTINE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA019467Antibody HPA061657Antibody CAB001447
Endocrine cells Not detected--
Enterocytes Not detected--
Enterocytes - Microvilli High--
Glandular cells -Not detectedNot detected
Goblet cells Not detected--
Paneth cells Not detected--







SMALL INTESTINE - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Average nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

487.1
overview
Male, age 65
Small intestine sample 232
nTPM: 173.1
Cell types%
Glandular cells:
55

Smooth muscle cells:
5

Other cell types:
40

overview
Male, age 39
Small intestine sample 233
nTPM: 515.4
Cell types%
Glandular cells:
40

Smooth muscle cells:
5

Other cell types:
55

overview
Male, age 68
Small intestine sample 234
nTPM: 607
Cell types%
Glandular cells:
30

Smooth muscle cells:
15

Other cell types:
55

N/A
Male, age 85
Small intestine sample 235
nTPM: 653

SMALL INTESTINE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1888.6
GTEx sample id Sample description nTPM
Small Intestine - Terminal Ileum
Average nTPM: 1888.6
Samples: 187

Max nTPM: 12302.6
Min nTPM: 136.1
Std nTPM: 2650.3
Median nTPM: 636.3
GTEX-Y5V5-1826-SM-4VDS5 60-69 years, female 12302.6
GTEX-WFON-1526-SM-4LVMP 40-49 years, male 11599.8
GTEX-1OKEX-1126-SM-DTXEB 60-69 years, male 10980.1
GTEX-1I1GT-1826-SM-ARZLW 60-69 years, female 10914.1
GTEX-117YX-0326-SM-5GICL 50-59 years, male 10018.0
GTEX-XPVG-1726-SM-4B65W 50-59 years, male 9954.5
GTEX-1S82Z-1826-SM-E9TIK 30-39 years, female 9711.4
GTEX-Y3I4-1326-SM-4TT8Z 50-59 years, male 9668.1
GTEX-XMK1-1826-SM-4B66F 40-49 years, male 9273.8
GTEX-1R9JW-1926-SM-EVR4J 30-39 years, female 9118.3
GTEX-ZF2S-1726-SM-57WFT 50-59 years, female 8440.9
GTEX-WEY5-1526-SM-4LMJF 40-49 years, female 7645.4
GTEX-13NYB-1826-SM-5J1N3 40-49 years, male 7384.0
GTEX-WYJK-1526-SM-4ONCW 50-59 years, male 7133.1
GTEX-ZQUD-0926-SM-57WE3 30-39 years, male 6920.6
GTEX-11LCK-1926-SM-5A5KE 30-39 years, male 6834.7
GTEX-Y111-2226-SM-4SOJB 50-59 years, male 6429.2
GTEX-1192X-2526-SM-59868 50-59 years, male 6169.7
GTEX-ZAB5-1526-SM-5HL9P 50-59 years, male 6098.9
GTEX-17KNJ-1626-SM-718AL 50-59 years, male 5968.1
GTEX-1QCLZ-2126-SM-EWRNC 60-69 years, female 5638.1
GTEX-14C39-1826-SM-5ZZW4 40-49 years, male 5465.3
GTEX-131XE-0926-SM-5HL7J 50-59 years, male 5336.7
GTEX-111CU-1326-SM-5NQ8L 50-59 years, male 4978.1
GTEX-12WSK-1526-SM-5CVNO 40-49 years, female 4850.2
GTEX-Y3IK-1726-SM-4YCCR 50-59 years, female 4544.0
GTEX-13OVI-1926-SM-5IJCG 60-69 years, female 4454.8
GTEX-1QW4Y-1226-SM-EWRMY 30-39 years, male 4204.2
GTEX-13111-1426-SM-5DUW3 50-59 years, male 3903.1
GTEX-ZPIC-2326-SM-57WDW 40-49 years, female 3887.2
GTEX-1LH75-1926-SM-DIPGD 50-59 years, female 3350.9
GTEX-1C64O-2526-SM-79ONO 60-69 years, male 3071.3
GTEX-1BAJH-2526-SM-7IGOT 70-79 years, male 3066.6
GTEX-1RAZA-1826-SM-DTXA2 20-29 years, male 2977.3
GTEX-Y114-1426-SM-4TT6W 50-59 years, female 2942.7
GTEX-WFG7-1726-SM-4LVME 20-29 years, male 2753.6
GTEX-ZQG8-2526-SM-57WEQ 60-69 years, female 2646.2
GTEX-15EU6-1826-SM-7PC1W 50-59 years, male 2585.0
GTEX-1S5ZA-1326-SM-EV7BB 20-29 years, male 2531.8
GTEX-1MUQO-2426-SM-EAZ5A 60-69 years, male 2397.4
GTEX-1LGOU-1426-SM-D3L8N 20-29 years, female 2338.7
GTEX-ZC5H-2326-SM-4WAYT 40-49 years, female 2298.4
GTEX-1R9PM-1626-SM-DPRY9 20-29 years, male 2261.0
GTEX-17HHE-1726-SM-79OKT 50-59 years, male 2167.0
GTEX-17MFQ-1026-SM-7KFSZ 20-29 years, male 2028.1
GTEX-1MGNQ-2326-SM-EV7BG 40-49 years, male 2020.9
GTEX-1RAZR-1826-SM-E6CRE 40-49 years, male 1996.6
GTEX-1NSGN-2126-SM-DPRYN 50-59 years, male 1835.7
GTEX-13QBU-1926-SM-5IJEW 40-49 years, female 1599.3
GTEX-1EMGI-2826-SM-7IGMR 60-69 years, male 1522.4
GTEX-1B8KZ-1126-SM-7IGLX 50-59 years, male 1511.2
GTEX-Y5LM-1626-SM-4VDTB 40-49 years, female 1494.7
GTEX-13O21-1026-SM-5IJDU 50-59 years, male 1492.8
GTEX-1R7EV-1226-SM-DTX82 40-49 years, male 1492.2
GTEX-15DZA-0826-SM-6AJBF 30-39 years, female 1488.1
GTEX-1JMQK-2426-SM-CXZJU 60-69 years, male 1421.7
GTEX-14PJ3-1326-SM-664O7 50-59 years, male 1412.3
GTEX-13W3W-2026-SM-5K7UL 60-69 years, female 1391.5
GTEX-ZTPG-2626-SM-57WFX 20-29 years, female 1390.8
GTEX-X15G-1426-SM-4PQZK 50-59 years, female 1386.7
GTEX-145ME-0926-SM-5O9AR 40-49 years, female 1320.9
GTEX-ZP4G-1626-SM-57WGD 20-29 years, female 1231.1
GTEX-1H1DE-1426-SM-9JGHV 20-29 years, male 1230.4
GTEX-1R9K4-2326-SM-E6CRB 60-69 years, male 1107.8
GTEX-XBED-1426-SM-4AT4G 60-69 years, male 1100.2
GTEX-ZVT2-2126-SM-5NQ93 50-59 years, female 1053.4
GTEX-18A66-2526-SM-7KFTZ 60-69 years, male 1031.1
GTEX-16A39-1426-SM-6LLI6 30-39 years, female 1008.7
GTEX-13RTK-0826-SM-5Q5C6 20-29 years, male 1007.7
GTEX-ZPCL-1726-SM-57WEO 60-69 years, female 970.2
GTEX-1CAMS-2426-SM-7DHMV 40-49 years, female 964.2
GTEX-WFG8-1626-SM-4LVMB 20-29 years, male 962.8
GTEX-148VJ-2226-SM-5NQ9M 70-79 years, male 954.7
GTEX-UPK5-2026-SM-4JBIM 40-49 years, male 949.3
GTEX-1GMR3-2726-SM-7MKFB 40-49 years, male 942.8
GTEX-1CB4F-1826-SM-7MGXI 60-69 years, male 905.8
GTEX-1JJE9-2226-SM-CXZJM 70-79 years, male 880.0
GTEX-1R9K5-2026-SM-E6CPS 50-59 years, male 875.7
GTEX-1F75I-2526-SM-9WPOZ 40-49 years, male 856.9
GTEX-1JK1U-1226-SM-CNNPN 60-69 years, male 843.6
GTEX-1OJC3-1626-SM-E9U65 20-29 years, male 840.4
GTEX-1RAZQ-2226-SM-DPRZR 30-39 years, male 837.1
GTEX-14PKV-2026-SM-6AJ9A 20-29 years, female 828.7
GTEX-1L5NE-1826-SM-EV79T 50-59 years, male 823.1
GTEX-WHSB-1026-SM-4M1XN 50-59 years, male 783.8
GTEX-1QPFJ-2626-SM-DPRZU 30-39 years, female 710.3
GTEX-ZLWG-1626-SM-DNZZ1 50-59 years, female 708.9
GTEX-YFCO-1326-SM-664NV 40-49 years, male 692.2
GTEX-11EQ9-1326-SM-5985X 30-39 years, male 685.7
GTEX-139T6-1026-SM-5IJGC 50-59 years, male 682.1
GTEX-12BJ1-1926-SM-5HL9Z 60-69 years, male 662.9
GTEX-1497J-1926-SM-5TDCC 60-69 years, male 662.2
GTEX-16AAH-1426-SM-7KFTR 50-59 years, male 644.3
GTEX-ZYFG-2026-SM-5E43Y 60-69 years, female 636.3
GTEX-XAJ8-0526-SM-47JYK 40-49 years, male 630.7
GTEX-1KXAM-2026-SM-DHXKI 60-69 years, male 607.3
GTEX-1R7EU-1326-SM-E6CQ6 60-69 years, male 605.3
GTEX-ZEX8-1826-SM-57WBH 50-59 years, male 602.8
GTEX-1QP28-1726-SM-E6CRK 50-59 years, female 600.1
GTEX-YF7O-1826-SM-5IFIU 50-59 years, male 598.4
GTEX-VUSG-1726-SM-4KKZL 50-59 years, male 591.9
GTEX-11P7K-1626-SM-5GU63 30-39 years, male 590.9
GTEX-WH7G-1626-SM-4LVMY 40-49 years, male 585.1
GTEX-13O61-1326-SM-5KM31 60-69 years, male 578.4
GTEX-ZA64-1226-SM-5HL7B 20-29 years, male 576.2
GTEX-WRHK-1026-SM-4MVOD 20-29 years, female 576.0
GTEX-YEC4-1726-SM-4W21E 40-49 years, male 571.9
GTEX-11TUW-1926-SM-5BC58 60-69 years, male 570.6
GTEX-Z9EW-0926-SM-5CVMM 40-49 years, male 552.2
GTEX-XXEK-1026-SM-4BRUW 50-59 years, male 551.1
GTEX-14PJN-0826-SM-686ZL 30-39 years, male 548.3
GTEX-11P82-0826-SM-5P9GU 20-29 years, male 545.2
GTEX-1IKOE-1926-SM-ARU7V 30-39 years, female 539.0
GTEX-14DAR-1426-SM-5RQIR 50-59 years, male 538.9
GTEX-14XAO-1926-SM-6ETZO 60-69 years, female 533.8
GTEX-11DXX-1626-SM-5H11H 60-69 years, female 530.9
GTEX-11VI4-1626-SM-5EQKO 40-49 years, female 529.4
GTEX-1PIEJ-1526-SM-E6CP8 20-29 years, female 524.3
GTEX-1J8QM-1026-SM-C1YQA 60-69 years, female 521.4
GTEX-WQUQ-2426-SM-4MVNW 60-69 years, male 521.3
GTEX-18QFQ-1626-SM-72D7H 30-39 years, male 516.1
GTEX-1QP2A-2426-SM-EXOJA 50-59 years, male 511.1
GTEX-13113-1226-SM-5EGHT 60-69 years, female 509.8
GTEX-11NSD-1726-SM-5N9C3 20-29 years, male 502.0
GTEX-ZLV1-1126-SM-4WWBW 60-69 years, female 498.4
GTEX-1HSMQ-2226-SM-C1YRD 50-59 years, male 498.1
GTEX-X5EB-1626-SM-4E3IV 40-49 years, male 496.2
GTEX-1J8Q3-2526-SM-CNNQ4 60-69 years, male 484.9
GTEX-ZVZP-1826-SM-5GZXB 50-59 years, male 477.7
GTEX-131XF-1326-SM-5GCMQ 60-69 years, male 476.7
GTEX-1GMR2-1026-SM-7MKHJ 50-59 years, male 473.9
GTEX-13PL7-2626-SM-5IFH4 60-69 years, female 468.0
GTEX-1JN76-1126-SM-C1YRL 20-29 years, female 466.8
GTEX-1C475-1426-SM-793CH 40-49 years, female 464.3
GTEX-ZVP2-1726-SM-5GU5P 50-59 years, male 463.7
GTEX-1PDJ9-1826-SM-E9U66 20-29 years, male 455.0
GTEX-Y9LG-1626-SM-5IFHM 30-39 years, male 454.6
GTEX-1AX8Z-2526-SM-731E3 60-69 years, male 453.1
GTEX-1CAMR-0826-SM-7MKFK 20-29 years, male 432.5
GTEX-14PKU-1626-SM-6871C 40-49 years, female 431.9
GTEX-16NGA-1126-SM-7KFSY 40-49 years, female 431.8
GTEX-WFJO-0926-SM-4LVM2 30-39 years, male 422.8
GTEX-14PJ6-1726-SM-6AJBN 60-69 years, female 418.7
GTEX-11DXZ-1326-SM-5H11X 50-59 years, male 417.7
GTEX-145LT-1026-SM-5LU9O 40-49 years, male 415.8
GTEX-1H11D-2526-SM-9JGGU 40-49 years, male 411.6
GTEX-XUZC-1426-SM-4BRV3 30-39 years, female 409.3
GTEX-15G1A-1726-SM-6LPI4 30-39 years, male 408.9
GTEX-ZXES-1526-SM-5NQ95 30-39 years, female 401.1
GTEX-ZTSS-0926-SM-59865 40-49 years, male 400.0
GTEX-ZLFU-1526-SM-4WWBT 40-49 years, male 394.9
GTEX-14PK6-1626-SM-6871I 70-79 years, female 393.5
GTEX-144GM-1026-SM-79OKU 20-29 years, male 387.7
GTEX-YB5E-1526-SM-5IFIE 40-49 years, male 374.8
GTEX-139YR-2226-SM-5IFFW 50-59 years, male 370.2
GTEX-131XG-1726-SM-5LZUR 50-59 years, female 367.1
GTEX-ZG7Y-1926-SM-DNZZ5 50-59 years, male 366.1
GTEX-13FTW-2026-SM-5IJE2 40-49 years, male 357.8
GTEX-13FH7-1226-SM-5IJFK 50-59 years, female 352.8
GTEX-13CF3-1226-SM-5LZXN 60-69 years, female 352.7
GTEX-VJYA-0926-SM-4KL1N 60-69 years, male 350.9
GTEX-ZF29-1626-SM-4WKFJ 60-69 years, female 349.5
GTEX-1399R-2026-SM-5K7WN 30-39 years, male 348.3
GTEX-13X6H-1826-SM-7EWCZ 50-59 years, female 347.9
GTEX-183FY-1626-SM-793D8 20-29 years, male 344.0
GTEX-ZTX8-0526-SM-59HLD 20-29 years, male 343.7
GTEX-11I78-1126-SM-5A5K5 50-59 years, female 341.9
GTEX-1GL5R-2026-SM-7MKHP 50-59 years, male 337.4
GTEX-1LBAC-1526-SM-CXZKU 20-29 years, male 325.9
GTEX-11XUK-1426-SM-5EQMG 40-49 years, female 322.6
GTEX-XGQ4-1326-SM-4GIDU 50-59 years, male 313.5
GTEX-1399U-2126-SM-5IFEZ 50-59 years, female 312.7
GTEX-14PN3-2026-SM-68729 60-69 years, female 306.2
GTEX-14E6E-1626-SM-5RQI7 30-39 years, male 299.4
GTEX-111YS-1426-SM-5GID8 60-69 years, male 298.7
GTEX-WY7C-1826-SM-4ONCE 50-59 years, male 296.1
GTEX-1122O-1326-SM-5H11F 60-69 years, female 294.0
GTEX-ZZ64-0526-SM-5GZXM 20-29 years, male 292.2
GTEX-1B8KE-1726-SM-7IGMN 50-59 years, male 282.1
GTEX-1AMFI-1926-SM-731F2 50-59 years, female 278.4
GTEX-ZDTT-1726-SM-5HL69 60-69 years, male 275.6
GTEX-1K9T9-2726-SM-D4P3E 50-59 years, female 273.6
GTEX-16MTA-1526-SM-6LPJB 50-59 years, male 238.1
GTEX-13D11-0726-SM-5LZZB 50-59 years, female 233.0
GTEX-14BMU-1426-SM-5TDE5 20-29 years, female 228.9
GTEX-1399S-2026-SM-5KM4B 30-39 years, female 185.5
GTEX-133LE-1426-SM-5IFH1 20-29 years, female 136.1
Show allShow less

SMALL INTESTINE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

1404.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Small intestine
Scaled Tags Per Million: 1404.2
FF:10024-101D6 15,40,85 years, mixed 1404.2

Contact

  • NEWS ARTICLES
  • PRESS ROOM

The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS

The Human Protein Atlas

  • DOWNLOADABLE DATA
  • LICENCE & CITATION
  • HELP & FAQ
The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.


contact@proteinatlas.org