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TISSUE PRIMARY DATA VAGINA Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Vagina
Tissue proteome
Vagina
VAGINA - Expression summary
Protein expression
Vaginai

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Squamous epithelial cells: Not detected
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:2254.1 nTPM
GTEx:2254.1 nTPM
FANTOM5:1338.3 Scaled Tags Per Million

VAGINA - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA019467Antibody HPA061657Antibody CAB001447
Squamous epithelial cells Not detectedNot detectedNot detected



VAGINA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

2254.1
GTEx sample id Sample description nTPM
Vagina
Average nTPM: 2254.1
Samples: 156

Max nTPM: 12663.6
Min nTPM: 35.4
Std nTPM: 2420.5
Median nTPM: 1521.2
GTEX-1QPFJ-1626-SM-DTX7X 30-39 years, female 12663.6
GTEX-ZQG8-1126-SM-51MRL 60-69 years, female 11613.9
GTEX-1I4MK-1726-SM-ARL7O 50-59 years, female 9752.6
GTEX-ZV6S-1326-SM-59HJA 40-49 years, female 9181.6
GTEX-WEY5-0826-SM-4LMIH 40-49 years, female 8688.0
GTEX-Y114-1926-SM-4TT8J 50-59 years, female 8507.3
GTEX-12WSJ-1326-SM-5GCOB 40-49 years, female 8442.7
GTEX-YFC4-2926-SM-5IFJ8 40-49 years, female 7862.7
GTEX-UJHI-1326-SM-4IHJO 50-59 years, female 7823.7
GTEX-12WSD-2926-SM-5LZUH 60-69 years, female 7703.1
GTEX-S4UY-1326-SM-4AD4X 40-49 years, female 6878.2
GTEX-11GSP-2226-SM-5HL5Q 60-69 years, female 6290.9
GTEX-13W3W-2326-SM-5LU4Y 60-69 years, female 6169.4
GTEX-RU1J-1426-SM-46MUV 20-29 years, female 6099.0
GTEX-1HFI7-1126-SM-A96S5 50-59 years, female 5980.8
GTEX-11EM3-1826-SM-5A5KO 20-29 years, female 5840.6
GTEX-ZGAY-2226-SM-4YCCX 40-49 years, female 5678.1
GTEX-1MCC2-1126-SM-EVYD6 30-39 years, female 5565.9
GTEX-1I1GT-1226-SM-B2LVK 60-69 years, female 5371.8
GTEX-W5WG-1026-SM-4LMIF 50-59 years, female 5223.4
GTEX-13OVI-0926-SM-5J1MI 60-69 years, female 4723.9
GTEX-WRHU-2926-SM-4MVNQ 50-59 years, female 4571.0
GTEX-1QCLZ-2226-SM-DTX7R 60-69 years, female 4474.6
GTEX-146FR-2426-SM-5NQAU 60-69 years, female 4446.6
GTEX-147F3-1526-SM-5SIAK 50-59 years, female 4223.8
GTEX-13D11-1326-SM-5IJFY 50-59 years, female 4110.8
GTEX-QCQG-1226-SM-48U23 50-59 years, female 4005.1
GTEX-P4PP-2526-SM-3P61P 30-39 years, female 3782.0
GTEX-12ZZX-1926-SM-5EGKC 40-49 years, female 3758.7
GTEX-1LGRB-2126-SM-COH48 50-59 years, female 3684.7
GTEX-145ME-1426-SM-5RQJS 40-49 years, female 3569.2
GTEX-1AMFI-1526-SM-73KVY 50-59 years, female 3505.2
GTEX-1IE54-2626-SM-CMKFY 40-49 years, female 3441.5
GTEX-14PJM-2926-SM-69LOE 50-59 years, female 3386.4
GTEX-X8HC-2826-SM-46MWJ 50-59 years, female 3364.0
GTEX-13N11-1526-SM-5L3FL 50-59 years, female 3315.6
GTEX-XV7Q-1626-SM-4BRWC 40-49 years, female 3272.6
GTEX-XUZC-1226-SM-4BRVJ 30-39 years, female 3146.3
GTEX-OHPL-2526-SM-3MJGT 60-69 years, female 2786.9
GTEX-ZAK1-2426-SM-EXOHM 50-59 years, female 2774.4
GTEX-RWS6-1726-SM-47JXP 60-69 years, female 2621.6
GTEX-1PIEJ-1926-SM-EVYB7 20-29 years, female 2597.1
GTEX-ZYVF-0326-SM-5GIES 50-59 years, female 2579.1
GTEX-13QBU-1726-SM-5IJFQ 40-49 years, female 2575.0
GTEX-TMMY-1926-SM-4DXUU 40-49 years, female 2400.2
GTEX-14DAQ-2326-SM-5S2QX 60-69 years, female 2385.6
GTEX-QDT8-2526-SM-48TYX 30-39 years, female 2262.4
GTEX-ZP4G-0826-SM-4WWF3 20-29 years, female 2243.9
GTEX-14A5I-2726-SM-5SIB3 50-59 years, female 2241.8
GTEX-ZTPG-2226-SM-57WF9 20-29 years, female 2225.9
GTEX-145LS-2526-SM-5TDC9 60-69 years, female 2102.6
GTEX-14JG6-0726-SM-69LQH 30-39 years, female 2099.1
GTEX-ZVT3-2726-SM-5GU5X 60-69 years, female 2090.7
GTEX-13QIC-1826-SM-5J1MY 60-69 years, female 2007.5
GTEX-ZLWG-1126-SM-4WWFQ 50-59 years, female 1981.0
GTEX-16NPV-2526-SM-6M483 50-59 years, female 1962.6
GTEX-PWN1-2526-SM-48TDS 40-49 years, female 1933.5
GTEX-X15G-1926-SM-4PQZQ 50-59 years, female 1892.4
GTEX-131XG-2126-SM-5DUXG 50-59 years, female 1878.6
GTEX-1399U-1526-SM-5J2N7 50-59 years, female 1869.5
GTEX-PX3G-2526-SM-48TZV 20-29 years, female 1856.4
GTEX-13U4I-2026-SM-5LU3L 40-49 years, female 1825.4
GTEX-Y8LW-1426-SM-5RQJJ 50-59 years, female 1761.8
GTEX-18A7A-2826-SM-7LT8J 50-59 years, female 1743.6
GTEX-1F48J-2526-SM-7P8TU 50-59 years, female 1736.8
GTEX-15UF6-2126-SM-6M46Z 70-79 years, female 1735.9
GTEX-1JN1M-2326-SM-ARZNG 60-69 years, female 1698.7
GTEX-NPJ7-2526-SM-EV79A 60-69 years, female 1695.1
GTEX-1GMR8-2526-SM-7RHI9 50-59 years, female 1672.6
GTEX-1HCUA-1026-SM-A9SMI 50-59 years, female 1669.6
GTEX-1NUQO-1826-SM-E6CQU 20-29 years, female 1624.7
GTEX-TSE9-2526-SM-4DXUS 60-69 years, female 1607.6
GTEX-XUW1-0326-SM-4BOOR 50-59 years, female 1604.2
GTEX-15DYW-2926-SM-6PANA 60-69 years, female 1600.7
GTEX-1EWIQ-2326-SM-7IGNF 70-79 years, female 1576.2
GTEX-OHPN-2426-SM-E9TI5 60-69 years, female 1560.8
GTEX-1GN1U-2426-SM-9KNTU 50-59 years, female 1550.6
GTEX-183WM-2126-SM-7LG4I 70-79 years, female 1533.2
GTEX-1ICG6-1626-SM-ARL81 70-79 years, female 1509.3
GTEX-ZYY3-2626-SM-5N9DH 60-69 years, female 1463.4
GTEX-146FH-2626-SM-5Q5E1 50-59 years, female 1415.1
GTEX-13PVR-1426-SM-5S2PW 60-69 years, female 1408.7
GTEX-11VI4-0726-SM-5GU5B 40-49 years, female 1407.6
GTEX-131YS-2426-SM-5J2OD 60-69 years, female 1365.0
GTEX-1HCU8-2026-SM-9YFLE 60-69 years, female 1338.3
GTEX-1S5ZU-2626-SM-E9TII 20-29 years, female 1314.1
GTEX-1GN1W-1526-SM-7P8TG 50-59 years, female 1291.4
GTEX-17JCI-2526-SM-7DHLB 60-69 years, female 1150.5
GTEX-S4P3-1126-SM-4AD52 50-59 years, female 1141.3
GTEX-SN8G-2626-SM-EXUQT 50-59 years, female 1131.0
GTEX-WYVS-1426-SM-4ONCV 40-49 years, female 1108.3
GTEX-1R9JW-1426-SM-DTX9K 30-39 years, female 1053.1
GTEX-N7MT-1926-SM-3LK5N 60-69 years, female 1040.8
GTEX-14PJ6-1626-SM-6872D 60-69 years, female 1039.5
GTEX-PLZ4-2726-SM-3P61A 50-59 years, female 1038.4
GTEX-T2IS-1926-SM-4DM74 20-29 years, female 1038.4
GTEX-13PL7-2726-SM-5L3GB 60-69 years, female 1036.4
GTEX-11DXX-1726-SM-5H11T 60-69 years, female 997.5
GTEX-1QP28-1426-SM-EVR4E 50-59 years, female 996.7
GTEX-P78B-2226-SM-3P5ZZ 40-49 years, female 986.8
GTEX-14BMU-1926-SM-5S2QC 20-29 years, female 983.8
GTEX-15SHU-2926-SM-7KUKT 40-49 years, female 951.6
GTEX-ZVT2-0626-SM-5GICR 50-59 years, female 915.8
GTEX-1F5PL-1826-SM-7P8PP 40-49 years, female 913.9
GTEX-15ER7-2526-SM-7KUFW 20-29 years, female 861.2
GTEX-14H4A-2426-SM-664OQ 40-49 years, female 825.1
GTEX-113JC-1926-SM-5N9GE 50-59 years, female 821.7
GTEX-1LNCM-1026-SM-E9U5D 50-59 years, female 821.6
GTEX-18D9A-1026-SM-7KFRU 30-39 years, female 816.2
GTEX-1C475-0526-SM-793AC 40-49 years, female 807.2
GTEX-ZE7O-2426-SM-57WD7 50-59 years, female 783.2
GTEX-1LVAM-1926-SM-E6CIM 50-59 years, female 783.1
GTEX-1399S-2326-SM-5K7YV 30-39 years, female 772.0
GTEX-1CAMS-2326-SM-793CR 40-49 years, female 709.8
GTEX-11EMC-1926-SM-5A5JU 60-69 years, female 702.8
GTEX-QVJO-2526-SM-CYPRA 60-69 years, female 700.7
GTEX-1HCU6-2326-SM-ACKXP 60-69 years, female 660.7
GTEX-T6MO-1226-SM-4DM5S 40-49 years, female 645.2
GTEX-U3ZN-0926-SM-4DXTU 30-39 years, female 619.8
GTEX-1JN76-1526-SM-CNPPF 20-29 years, female 611.7
GTEX-1LGOU-1126-SM-D3LAI 20-29 years, female 588.1
GTEX-1117F-2526-SM-5GZY6 60-69 years, female 562.4
GTEX-1JMQL-2326-SM-CNNPV 50-59 years, female 530.1
GTEX-YJ8O-1226-SM-5P9JE 40-49 years, female 513.6
GTEX-1LVAN-1626-SM-CNPQ7 50-59 years, female 503.1
GTEX-OHPK-2526-SM-3MJH9 50-59 years, female 500.8
GTEX-1LH75-1726-SM-DHXKZ 50-59 years, female 496.7
GTEX-1J1OQ-1826-SM-CL53R 40-49 years, female 442.0
GTEX-1A8FM-2426-SM-7IGPE 50-59 years, female 438.3
GTEX-Q734-1426-SM-DTXFX 40-49 years, female 401.1
GTEX-15SB6-1426-SM-7KUEM 50-59 years, female 395.5
GTEX-11XUK-1326-SM-5EQM4 40-49 years, female 389.7
GTEX-17F9Y-2326-SM-7DUFP 70-79 years, female 367.6
GTEX-1J8EW-2526-SM-CKZO2 60-69 years, female 361.7
GTEX-16NGA-1626-SM-72D6M 40-49 years, female 352.6
GTEX-ZXES-0626-SM-5E45P 30-39 years, female 310.8
GTEX-PWCY-1726-SM-48TD3 20-29 years, female 286.7
GTEX-11TTK-2726-SM-5GU58 60-69 years, female 227.8
GTEX-Y3IK-2226-SM-4YCD4 50-59 years, female 211.1
GTEX-1HBPH-2926-SM-9WPNX 40-49 years, female 210.7
GTEX-1HBPM-2726-SM-9WYUA 60-69 years, female 200.4
GTEX-11P81-2126-SM-5HL6N 30-39 years, female 195.2
GTEX-1IDJU-1026-SM-AHZ2U 60-69 years, female 195.1
GTEX-TML8-1126-SM-4DXSS 40-49 years, female 171.2
GTEX-SE5C-1126-SM-4BRWZ 40-49 years, female 154.5
GTEX-11I78-2026-SM-5987C 50-59 years, female 125.4
GTEX-ZC5H-2226-SM-4WAWS 40-49 years, female 120.2
GTEX-1GF9U-1926-SM-7P8TZ 40-49 years, female 119.7
GTEX-14AS3-1726-SM-5RQJV 40-49 years, female 113.0
GTEX-14PKU-1326-SM-6871B 40-49 years, female 109.4
GTEX-15SDE-1726-SM-6LPJS 50-59 years, female 95.3
GTEX-S7SF-1426-SM-4AT5A 20-29 years, female 79.9
GTEX-S341-1226-SM-4AD5S 40-49 years, female 65.0
GTEX-1MCYP-1326-SM-EV7AD 20-29 years, female 56.4
GTEX-14PN3-1626-SM-6AJAV 60-69 years, female 50.2
GTEX-ZZPU-2226-SM-5EGIV 50-59 years, female 35.4
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VAGINA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

1338.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Vagina
Scaled Tags Per Million: 1338.3
FF:10204-103F6 68 years, female 1338.3

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