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TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Not detected
Neuronal cells: Medium
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
GTEx:628.1 nTPM
FANTOM5:356.3 Scaled Tags Per Million
Pig:245.0 nTPM

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA059015
Glial cells Not detected
Neuronal cells Medium



CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

628.1
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 628.1
Samples: 246

Max nTPM: 1594.4
Min nTPM: 242.7
Std nTPM: 168.6
Median nTPM: 615.3
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 1594.4
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 1311.9
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 1264.7
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 1202.4
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 1131.7
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 1122.4
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 1112.3
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 1081.1
GTEX-12WSH-0011-R5b-SM-5P9F3 50-59 years, male 1045.3
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 944.5
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 893.5
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 882.2
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 877.0
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 875.4
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 864.5
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 863.4
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 858.3
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 850.7
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 850.1
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 840.0
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 832.6
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 826.8
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 823.9
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 815.5
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 809.8
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 808.5
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 802.2
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 795.7
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 791.6
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 791.2
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 789.8
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 779.2
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 774.1
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 772.0
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 766.2
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 760.7
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 757.8
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 748.6
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 748.5
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 748.3
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 744.9
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 739.1
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 736.5
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 734.1
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 730.9
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 725.1
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 723.9
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 723.6
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 723.3
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 721.1
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 720.2
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 719.5
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 719.4
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 715.3
GTEX-TSE9-0011-R5A-SM-3DB7J 60-69 years, female 706.7
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 705.1
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 704.5
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 701.2
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 699.0
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 694.9
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 693.0
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 692.7
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 691.4
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 688.0
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 683.5
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 682.3
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 679.3
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 678.3
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 676.0
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 675.7
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 672.3
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 672.2
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 670.0
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 669.2
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 668.8
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 666.3
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 665.1
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 663.7
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 662.9
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 658.9
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 658.6
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 658.3
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 656.6
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 656.4
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 655.2
GTEX-RU72-0011-R5A-SM-2TF6U 50-59 years, female 652.0
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 651.4
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 651.4
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 649.3
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 647.3
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 643.4
GTEX-OXRO-0011-R5A-SM-2I5EG 60-69 years, female 642.8
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 641.2
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 640.3
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 639.7
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 639.4
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 638.6
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 635.9
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 635.2
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 634.0
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 633.7
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 633.1
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 631.8
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 631.3
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 630.9
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 629.0
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 628.9
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 627.0
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 626.8
GTEX-OXRN-0011-R5A-SM-2I5EF 50-59 years, male 624.9
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 624.9
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 624.2
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 623.3
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 621.4
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 620.1
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 619.8
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 619.5
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 619.2
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 619.1
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 615.7
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 615.6
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 615.6
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 615.3
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 615.2
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 610.7
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 606.9
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 606.3
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 605.5
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 601.3
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 600.8
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 600.3
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 600.2
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 599.7
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 599.7
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 598.6
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 598.3
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 595.6
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 592.8
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 592.5
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 592.0
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 591.9
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 590.5
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 589.7
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 587.3
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 585.3
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 580.8
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 579.3
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 578.5
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 577.8
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 577.4
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 576.9
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 573.9
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 572.3
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 571.9
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 571.5
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 571.3
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 570.7
GTEX-R55E-0011-R5A-SM-2TC5N 20-29 years, male 567.6
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 567.3
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 564.7
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 564.1
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 561.7
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 561.3
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 557.1
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 556.0
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 555.7
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 554.6
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 554.3
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 552.2
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 550.6
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 549.9
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 547.7
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 546.2
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 545.6
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 545.0
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 544.9
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 543.8
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 542.4
GTEX-P44G-0011-R5A-SM-2I3FA 30-39 years, male 541.4
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 541.0
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 540.4
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 539.5
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 535.8
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 535.3
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 529.9
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 528.4
GTEX-N7MT-0011-R5a-SM-2I3G6 60-69 years, female 526.7
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 523.7
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 522.4
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 521.4
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 517.6
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 517.5
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 514.6
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 510.5
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 510.1
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 509.3
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 508.1
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 507.5
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 507.3
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 505.2
GTEX-18464-0011-R5b-SM-718A6 50-59 years, male 500.4
GTEX-RVPV-0011-R5A-SM-2TF69 60-69 years, male 498.0
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 495.8
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 495.2
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 492.4
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 489.3
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 489.1
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 488.6
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 487.5
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 479.9
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 479.2
GTEX-UTHO-0011-R5A-SM-3GIJD 60-69 years, male 478.4
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 478.2
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 477.4
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 476.9
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 463.7
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 463.1
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 461.2
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 458.4
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 453.8
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 452.4
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 451.0
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 444.9
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 443.1
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 441.3
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 438.9
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 438.7
GTEX-S7SE-0011-R5A-SM-2XCDA 50-59 years, male 436.6
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 430.7
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 430.7
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 428.8
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 425.7
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 422.7
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 419.5
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 419.2
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 408.6
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 407.8
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 389.1
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 385.8
GTEX-P44H-0011-R5A-SM-2XCEX 40-49 years, male 383.7
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 359.1
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 350.5
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 343.7
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 288.0
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 243.5
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 242.7
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

356.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 356.3
FF:10164-103B2 76 years, female 356.3

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

245.0
Pig sample Sample description nTPM
Caudate
nTPM: 245.0
Samples: 4

Max nTPM: 273.6
Min nTPM: 205.2
Sample A Female 235.8
Sample B Female 265.3
Sample C Male 273.6
Sample D Male 205.2

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