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TISSUE PRIMARY DATA SMALL INTESTINE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Small intestine
Tissue proteome
Intestine
SMALL INTESTINE - Expression summary
Protein expression
Small intestinei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glandular cells: Medium
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:692.9 nTPM
HPA:560.3 nTPM
GTEx:692.9 nTPM
FANTOM5:781.4 Scaled Tags Per Million

SMALL INTESTINE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA059015
Glandular cells Medium


SMALL INTESTINE - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Average nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

560.3
overview
Male, age 65
Small intestine sample 232
nTPM: 656.6
Cell types%
Glandular cells:
55

Smooth muscle cells:
5

Other cell types:
40

overview
Male, age 39
Small intestine sample 233
nTPM: 574.2
Cell types%
Glandular cells:
40

Smooth muscle cells:
5

Other cell types:
55

overview
Male, age 68
Small intestine sample 234
nTPM: 503.1
Cell types%
Glandular cells:
30

Smooth muscle cells:
15

Other cell types:
55

N/A
Male, age 85
Small intestine sample 235
nTPM: 507.2

SMALL INTESTINE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

692.9
GTEx sample id Sample description nTPM
Small Intestine - Terminal Ileum
Average nTPM: 692.9
Samples: 187

Max nTPM: 1299.7
Min nTPM: 417.9
Std nTPM: 153.5
Median nTPM: 680.4
GTEX-1NSGN-2126-SM-DPRYN 50-59 years, male 1299.7
GTEX-1EMGI-2826-SM-7IGMR 60-69 years, male 1116.7
GTEX-14PK6-1626-SM-6871I 70-79 years, female 1104.0
GTEX-WRHK-1026-SM-4MVOD 20-29 years, female 1081.0
GTEX-11VI4-1626-SM-5EQKO 40-49 years, female 1062.2
GTEX-1RAZQ-2226-SM-DPRZR 30-39 years, male 1017.6
GTEX-183FY-1626-SM-793D8 20-29 years, male 989.6
GTEX-X15G-1426-SM-4PQZK 50-59 years, female 986.5
GTEX-Y3I4-1326-SM-4TT8Z 50-59 years, male 979.1
GTEX-1LH75-1926-SM-DIPGD 50-59 years, female 975.6
GTEX-1RAZA-1826-SM-DTXA2 20-29 years, male 962.7
GTEX-11TUW-1926-SM-5BC58 60-69 years, male 957.7
GTEX-WH7G-1626-SM-4LVMY 40-49 years, male 939.5
GTEX-1JJE9-2226-SM-CXZJM 70-79 years, male 931.2
GTEX-14XAO-1926-SM-6ETZO 60-69 years, female 927.4
GTEX-1PIEJ-1526-SM-E6CP8 20-29 years, female 910.4
GTEX-13O61-1326-SM-5KM31 60-69 years, male 901.6
GTEX-1399U-2126-SM-5IFEZ 50-59 years, female 900.0
GTEX-1MGNQ-2326-SM-EV7BG 40-49 years, male 897.9
GTEX-1QP28-1726-SM-E6CRK 50-59 years, female 896.0
GTEX-1OJC3-1626-SM-E9U65 20-29 years, male 894.1
GTEX-1PDJ9-1826-SM-E9U66 20-29 years, male 890.8
GTEX-1CB4F-1826-SM-7MGXI 60-69 years, male 887.6
GTEX-WEY5-1526-SM-4LMJF 40-49 years, female 882.6
GTEX-1GMR3-2726-SM-7MKFB 40-49 years, male 881.0
GTEX-13NYB-1826-SM-5J1N3 40-49 years, male 877.9
GTEX-1IKOE-1926-SM-ARU7V 30-39 years, female 869.9
GTEX-16A39-1426-SM-6LLI6 30-39 years, female 864.7
GTEX-VUSG-1726-SM-4KKZL 50-59 years, male 864.6
GTEX-1GL5R-2026-SM-7MKHP 50-59 years, male 862.0
GTEX-Y3IK-1726-SM-4YCCR 50-59 years, female 852.2
GTEX-WFJO-0926-SM-4LVM2 30-39 years, male 849.6
GTEX-148VJ-2226-SM-5NQ9M 70-79 years, male 849.0
GTEX-ZAB5-1526-SM-5HL9P 50-59 years, male 847.8
GTEX-1R9K4-2326-SM-E6CRB 60-69 years, male 844.4
GTEX-1QPFJ-2626-SM-DPRZU 30-39 years, female 838.6
GTEX-1R9JW-1926-SM-EVR4J 30-39 years, female 833.2
GTEX-117YX-0326-SM-5GICL 50-59 years, male 829.2
GTEX-11P82-0826-SM-5P9GU 20-29 years, male 828.4
GTEX-XPVG-1726-SM-4B65W 50-59 years, male 811.1
GTEX-13FH7-1226-SM-5IJFK 50-59 years, female 808.9
GTEX-131XE-0926-SM-5HL7J 50-59 years, male 785.3
GTEX-VJYA-0926-SM-4KL1N 60-69 years, male 773.0
GTEX-11NSD-1726-SM-5N9C3 20-29 years, male 772.8
GTEX-1GMR2-1026-SM-7MKHJ 50-59 years, male 770.6
GTEX-14PKU-1626-SM-6871C 40-49 years, female 765.5
GTEX-12BJ1-1926-SM-5HL9Z 60-69 years, male 764.5
GTEX-ZF29-1626-SM-4WKFJ 60-69 years, female 764.2
GTEX-16NGA-1126-SM-7KFSY 40-49 years, female 761.2
GTEX-1KXAM-2026-SM-DHXKI 60-69 years, male 759.1
GTEX-18QFQ-1626-SM-72D7H 30-39 years, male 758.9
GTEX-1S82Z-1826-SM-E9TIK 30-39 years, female 758.1
GTEX-1OKEX-1126-SM-DTXEB 60-69 years, male 756.6
GTEX-1H11D-2526-SM-9JGGU 40-49 years, male 752.6
GTEX-1LGOU-1426-SM-D3L8N 20-29 years, female 752.4
GTEX-ZLFU-1526-SM-4WWBT 40-49 years, male 750.3
GTEX-1BAJH-2526-SM-7IGOT 70-79 years, male 749.4
GTEX-ZVP2-1726-SM-5GU5P 50-59 years, male 745.9
GTEX-UPK5-2026-SM-4JBIM 40-49 years, male 745.0
GTEX-13111-1426-SM-5DUW3 50-59 years, male 744.4
GTEX-Y5V5-1826-SM-4VDS5 60-69 years, female 742.1
GTEX-11LCK-1926-SM-5A5KE 30-39 years, male 741.8
GTEX-13OVI-1926-SM-5IJCG 60-69 years, female 740.9
GTEX-WYJK-1526-SM-4ONCW 50-59 years, male 738.5
GTEX-13113-1226-SM-5EGHT 60-69 years, female 734.9
GTEX-ZA64-1226-SM-5HL7B 20-29 years, male 733.3
GTEX-1C475-1426-SM-793CH 40-49 years, female 733.0
GTEX-1I1GT-1826-SM-ARZLW 60-69 years, female 730.7
GTEX-1RAZR-1826-SM-E6CRE 40-49 years, male 730.5
GTEX-ZC5H-2326-SM-4WAYT 40-49 years, female 729.5
GTEX-XMK1-1826-SM-4B66F 40-49 years, male 726.3
GTEX-13W3W-2026-SM-5K7UL 60-69 years, female 723.9
GTEX-1HSMQ-2226-SM-C1YRD 50-59 years, male 723.3
GTEX-1JMQK-2426-SM-CXZJU 60-69 years, male 721.4
GTEX-1QW4Y-1226-SM-EWRMY 30-39 years, male 713.8
GTEX-131XG-1726-SM-5LZUR 50-59 years, female 711.8
GTEX-11XUK-1426-SM-5EQMG 40-49 years, female 711.3
GTEX-1B8KZ-1126-SM-7IGLX 50-59 years, male 707.9
GTEX-17MFQ-1026-SM-7KFSZ 20-29 years, male 706.7
GTEX-YEC4-1726-SM-4W21E 40-49 years, male 706.0
GTEX-13RTK-0826-SM-5Q5C6 20-29 years, male 703.7
GTEX-14E6E-1626-SM-5RQI7 30-39 years, male 702.2
GTEX-1S5ZA-1326-SM-EV7BB 20-29 years, male 699.7
GTEX-139T6-1026-SM-5IJGC 50-59 years, male 699.5
GTEX-13QBU-1926-SM-5IJEW 40-49 years, female 694.3
GTEX-1F75I-2526-SM-9WPOZ 40-49 years, male 692.5
GTEX-WFON-1526-SM-4LVMP 40-49 years, male 692.2
GTEX-15DZA-0826-SM-6AJBF 30-39 years, female 691.0
GTEX-1192X-2526-SM-59868 50-59 years, male 690.6
GTEX-ZQUD-0926-SM-57WE3 30-39 years, male 689.6
GTEX-ZEX8-1826-SM-57WBH 50-59 years, male 688.1
GTEX-17KNJ-1626-SM-718AL 50-59 years, male 685.9
GTEX-14C39-1826-SM-5ZZW4 40-49 years, male 683.8
GTEX-1CAMR-0826-SM-7MKFK 20-29 years, male 680.4
GTEX-Z9EW-0926-SM-5CVMM 40-49 years, male 677.2
GTEX-14BMU-1426-SM-5TDE5 20-29 years, female 672.9
GTEX-1LBAC-1526-SM-CXZKU 20-29 years, male 672.6
GTEX-ZPIC-2326-SM-57WDW 40-49 years, female 665.3
GTEX-13X6H-1826-SM-7EWCZ 50-59 years, female 661.1
GTEX-Y5LM-1626-SM-4VDTB 40-49 years, female 658.9
GTEX-ZTPG-2626-SM-57WFX 20-29 years, female 656.5
GTEX-11DXX-1626-SM-5H11H 60-69 years, female 655.7
GTEX-1H1DE-1426-SM-9JGHV 20-29 years, male 654.8
GTEX-1QP2A-2426-SM-EXOJA 50-59 years, male 653.5
GTEX-13CF3-1226-SM-5LZXN 60-69 years, female 652.8
GTEX-Y111-2226-SM-4SOJB 50-59 years, male 650.8
GTEX-14DAR-1426-SM-5RQIR 50-59 years, male 649.0
GTEX-ZYFG-2026-SM-5E43Y 60-69 years, female 648.6
GTEX-14PKV-2026-SM-6AJ9A 20-29 years, female 646.7
GTEX-ZLWG-1626-SM-DNZZ1 50-59 years, female 646.3
GTEX-111YS-1426-SM-5GID8 60-69 years, male 642.6
GTEX-18A66-2526-SM-7KFTZ 60-69 years, male 642.4
GTEX-1JN76-1126-SM-C1YRL 20-29 years, female 642.3
GTEX-1K9T9-2726-SM-D4P3E 50-59 years, female 642.0
GTEX-12WSK-1526-SM-5CVNO 40-49 years, female 633.1
GTEX-11I78-1126-SM-5A5K5 50-59 years, female 632.9
GTEX-Y114-1426-SM-4TT6W 50-59 years, female 629.7
GTEX-X5EB-1626-SM-4E3IV 40-49 years, male 621.8
GTEX-145ME-0926-SM-5O9AR 40-49 years, female 621.7
GTEX-ZF2S-1726-SM-57WFT 50-59 years, female 614.6
GTEX-ZXES-1526-SM-5NQ95 30-39 years, female 614.2
GTEX-XGQ4-1326-SM-4GIDU 50-59 years, male 610.1
GTEX-XBED-1426-SM-4AT4G 60-69 years, male 609.3
GTEX-Y9LG-1626-SM-5IFHM 30-39 years, male 605.7
GTEX-1R9PM-1626-SM-DPRY9 20-29 years, male 605.2
GTEX-XUZC-1426-SM-4BRV3 30-39 years, female 604.9
GTEX-WFG7-1726-SM-4LVME 20-29 years, male 602.1
GTEX-1B8KE-1726-SM-7IGMN 50-59 years, male 602.0
GTEX-ZG7Y-1926-SM-DNZZ5 50-59 years, male 599.0
GTEX-ZZ64-0526-SM-5GZXM 20-29 years, male 596.6
GTEX-13D11-0726-SM-5LZZB 50-59 years, female 593.5
GTEX-YF7O-1826-SM-5IFIU 50-59 years, male 593.5
GTEX-ZQG8-2526-SM-57WEQ 60-69 years, female 588.1
GTEX-1399S-2026-SM-5KM4B 30-39 years, female 587.9
GTEX-11EQ9-1326-SM-5985X 30-39 years, male 585.7
GTEX-1R7EV-1226-SM-DTX82 40-49 years, male 584.3
GTEX-15EU6-1826-SM-7PC1W 50-59 years, male 582.9
GTEX-15G1A-1726-SM-6LPI4 30-39 years, male 580.0
GTEX-1QCLZ-2126-SM-EWRNC 60-69 years, female 578.9
GTEX-YB5E-1526-SM-5IFIE 40-49 years, male 574.1
GTEX-11DXZ-1326-SM-5H11X 50-59 years, male 573.8
GTEX-1L5NE-1826-SM-EV79T 50-59 years, male 573.5
GTEX-1399R-2026-SM-5K7WN 30-39 years, male 571.8
GTEX-1J8QM-1026-SM-C1YQA 60-69 years, female 566.2
GTEX-145LT-1026-SM-5LU9O 40-49 years, male 565.1
GTEX-1C64O-2526-SM-79ONO 60-69 years, male 564.7
GTEX-1MUQO-2426-SM-EAZ5A 60-69 years, male 562.0
GTEX-17HHE-1726-SM-79OKT 50-59 years, male 554.4
GTEX-ZTSS-0926-SM-59865 40-49 years, male 553.2
GTEX-131XF-1326-SM-5GCMQ 60-69 years, male 550.7
GTEX-1CAMS-2426-SM-7DHMV 40-49 years, female 549.6
GTEX-14PJN-0826-SM-686ZL 30-39 years, male 548.6
GTEX-WQUQ-2426-SM-4MVNW 60-69 years, male 548.0
GTEX-ZVT2-2126-SM-5NQ93 50-59 years, female 541.6
GTEX-ZTX8-0526-SM-59HLD 20-29 years, male 540.8
GTEX-1122O-1326-SM-5H11F 60-69 years, female 540.6
GTEX-WFG8-1626-SM-4LVMB 20-29 years, male 539.6
GTEX-11P7K-1626-SM-5GU63 30-39 years, male 539.0
GTEX-14PJ6-1726-SM-6AJBN 60-69 years, female 538.1
GTEX-13FTW-2026-SM-5IJE2 40-49 years, male 538.0
GTEX-ZLV1-1126-SM-4WWBW 60-69 years, female 536.1
GTEX-ZP4G-1626-SM-57WGD 20-29 years, female 532.9
GTEX-XXEK-1026-SM-4BRUW 50-59 years, male 531.2
GTEX-ZVZP-1826-SM-5GZXB 50-59 years, male 527.6
GTEX-YFCO-1326-SM-664NV 40-49 years, male 523.0
GTEX-1497J-1926-SM-5TDCC 60-69 years, male 522.0
GTEX-ZPCL-1726-SM-57WEO 60-69 years, female 521.0
GTEX-14PJ3-1326-SM-664O7 50-59 years, male 520.3
GTEX-16AAH-1426-SM-7KFTR 50-59 years, male 519.9
GTEX-1AX8Z-2526-SM-731E3 60-69 years, male 517.4
GTEX-111CU-1326-SM-5NQ8L 50-59 years, male 517.0
GTEX-1JK1U-1226-SM-CNNPN 60-69 years, male 516.8
GTEX-13PL7-2626-SM-5IFH4 60-69 years, female 516.2
GTEX-16MTA-1526-SM-6LPJB 50-59 years, male 510.0
GTEX-14PN3-2026-SM-68729 60-69 years, female 506.1
GTEX-144GM-1026-SM-79OKU 20-29 years, male 504.2
GTEX-133LE-1426-SM-5IFH1 20-29 years, female 497.6
GTEX-139YR-2226-SM-5IFFW 50-59 years, male 483.8
GTEX-WY7C-1826-SM-4ONCE 50-59 years, male 483.8
GTEX-ZDTT-1726-SM-5HL69 60-69 years, male 470.4
GTEX-XAJ8-0526-SM-47JYK 40-49 years, male 457.0
GTEX-1J8Q3-2526-SM-CNNQ4 60-69 years, male 456.1
GTEX-1AMFI-1926-SM-731F2 50-59 years, female 441.5
GTEX-1R9K5-2026-SM-E6CPS 50-59 years, male 437.0
GTEX-13O21-1026-SM-5IJDU 50-59 years, male 435.7
GTEX-WHSB-1026-SM-4M1XN 50-59 years, male 433.1
GTEX-1R7EU-1326-SM-E6CQ6 60-69 years, male 417.9
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SMALL INTESTINE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

781.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Small intestine
Scaled Tags Per Million: 781.4
FF:10024-101D6 15,40,85 years, mixed 781.4

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