We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
FAU
HPA
RESOURCES
  • TISSUE
  • BRAIN
  • SINGLE CELL
  • SUBCELLULAR
  • CANCER
  • BLOOD
  • CELL LINE
  • STRUCTURE & INTERACTION
ABOUT
  • INTRODUCTION
  • HISTORY
  • ORGANIZATION
  • PUBLICATIONS
  • ANTIBODY SUBMISSION
  • ANTIBODY AVAILABILITY
  • ACKNOWLEDGMENTS
  • CONTACT
NEWS
  • NEWS ARTICLES
  • PRESS ROOM
LEARN
  • DICTIONARY
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
  • METHODS
  • EDUCATIONAL VIDEOS
DATA
  • DOWNLOADABLE DATA
  • PUBLICATION DATA
  • RELEASE HISTORY
HELP
  • ANTIBODY VALIDATION
  • ASSAYS & ANNOTATION
  • DISCLAIMER
  • HELP & FAQ
  • PRIVACY STATEMENT
  • LICENCE & CITATION
Fields »
Search result

Field
Term
Gene name
Class
Subclass
Class
Keyword
Chromosome
External id
Tissue
Cell type
Expression
Antibody panel
Tissue
Main location
Patient ID
Annotation
Tissue
Category
Tau score
Cluster
Reliability
Brain region
Category
Tau score
Brain region
Category
Tau score
Brain region
Category
Tau score
Cluster
Reliability
Tissue
Cell type
Enrichment
Cell type
Category
Tau score
Cell type
Category
Tau score
Cell type
Category
Tau score
Cell lineage
Category
Tau score
Cluster
Cluster
Location
Searches
Location
Cell line
Class
Type
Phase
Reliability
Cancer
Prognosis
Cancer
Category
Cancer
Category
Tau score
Cluster
Variants
Interacting gene (ensg_id)
Type
Number of interactions
Pathway
Category
Score
Score
Score
Validation
Validation
Validation
Validation
Antibodies
Data type
Column


  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • SUBCELL

  • CANCER

  • BLOOD

  • CELL LINE

  • STRUCT & INT

  • FAU
TISSUE PRIMARY DATA VAGINA Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Vagina
Tissue proteome
Vagina
VAGINA - Expression summary
Protein expression
Vaginai

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Squamous epithelial cells: Medium
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:768.9 nTPM
GTEx:768.9 nTPM
FANTOM5:1126.0 Scaled Tags Per Million

VAGINA - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA059015
Squamous epithelial cells Medium



VAGINA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

768.9
GTEx sample id Sample description nTPM
Vagina
Average nTPM: 768.9
Samples: 156

Max nTPM: 1629.8
Min nTPM: 466.4
Std nTPM: 170.4
Median nTPM: 741.1
GTEX-1AMFI-1526-SM-73KVY 50-59 years, female 1629.8
GTEX-NPJ7-2526-SM-EV79A 60-69 years, female 1370.3
GTEX-Y8LW-1426-SM-5RQJJ 50-59 years, female 1215.4
GTEX-1S5ZU-2626-SM-E9TII 20-29 years, female 1176.5
GTEX-12ZZX-1926-SM-5EGKC 40-49 years, female 1159.0
GTEX-ZE7O-2426-SM-57WD7 50-59 years, female 1148.0
GTEX-ZVT3-2726-SM-5GU5X 60-69 years, female 1103.0
GTEX-11GSP-2226-SM-5HL5Q 60-69 years, female 1084.9
GTEX-13D11-1326-SM-5IJFY 50-59 years, female 1055.9
GTEX-1LH75-1726-SM-DHXKZ 50-59 years, female 1030.4
GTEX-ZYVF-0326-SM-5GIES 50-59 years, female 1027.9
GTEX-131XG-2126-SM-5DUXG 50-59 years, female 1006.0
GTEX-SN8G-2626-SM-EXUQT 50-59 years, female 992.5
GTEX-12WSD-2926-SM-5LZUH 60-69 years, female 984.8
GTEX-1F5PL-1826-SM-7P8PP 40-49 years, female 976.8
GTEX-S4UY-1326-SM-4AD4X 40-49 years, female 973.6
GTEX-13OVI-0926-SM-5J1MI 60-69 years, female 972.4
GTEX-ZTPG-2226-SM-57WF9 20-29 years, female 970.5
GTEX-183WM-2126-SM-7LG4I 70-79 years, female 969.1
GTEX-14AS3-1726-SM-5RQJV 40-49 years, female 966.3
GTEX-ZQG8-1126-SM-51MRL 60-69 years, female 954.5
GTEX-X8HC-2826-SM-46MWJ 50-59 years, female 952.9
GTEX-RWS6-1726-SM-47JXP 60-69 years, female 945.8
GTEX-WEY5-0826-SM-4LMIH 40-49 years, female 934.3
GTEX-14JG6-0726-SM-69LQH 30-39 years, female 932.4
GTEX-13U4I-2026-SM-5LU3L 40-49 years, female 930.6
GTEX-QDT8-2526-SM-48TYX 30-39 years, female 926.1
GTEX-YFC4-2926-SM-5IFJ8 40-49 years, female 909.0
GTEX-WRHU-2926-SM-4MVNQ 50-59 years, female 903.0
GTEX-13QIC-1826-SM-5J1MY 60-69 years, female 893.3
GTEX-16NPV-2526-SM-6M483 50-59 years, female 892.4
GTEX-11TTK-2726-SM-5GU58 60-69 years, female 889.7
GTEX-1JMQL-2326-SM-CNNPV 50-59 years, female 877.1
GTEX-TSE9-2526-SM-4DXUS 60-69 years, female 874.9
GTEX-147F3-1526-SM-5SIAK 50-59 years, female 872.0
GTEX-15UF6-2126-SM-6M46Z 70-79 years, female 857.5
GTEX-1LVAM-1926-SM-E6CIM 50-59 years, female 855.9
GTEX-P4PP-2526-SM-3P61P 30-39 years, female 854.0
GTEX-S4P3-1126-SM-4AD52 50-59 years, female 846.5
GTEX-W5WG-1026-SM-4LMIF 50-59 years, female 844.3
GTEX-1EWIQ-2326-SM-7IGNF 70-79 years, female 843.3
GTEX-XUZC-1226-SM-4BRVJ 30-39 years, female 837.2
GTEX-WYVS-1426-SM-4ONCV 40-49 years, female 834.8
GTEX-1GMR8-2526-SM-7RHI9 50-59 years, female 831.4
GTEX-113JC-1926-SM-5N9GE 50-59 years, female 827.7
GTEX-N7MT-1926-SM-3LK5N 60-69 years, female 827.7
GTEX-PLZ4-2726-SM-3P61A 50-59 years, female 826.1
GTEX-1399U-1526-SM-5J2N7 50-59 years, female 822.7
GTEX-OHPK-2526-SM-3MJH9 50-59 years, female 818.1
GTEX-T6MO-1226-SM-4DM5S 40-49 years, female 814.9
GTEX-1117F-2526-SM-5GZY6 60-69 years, female 813.1
GTEX-11EMC-1926-SM-5A5JU 60-69 years, female 804.6
GTEX-1QP28-1426-SM-EVR4E 50-59 years, female 803.9
GTEX-Y114-1926-SM-4TT8J 50-59 years, female 802.3
GTEX-ZLWG-1126-SM-4WWFQ 50-59 years, female 797.0
GTEX-13PL7-2726-SM-5L3GB 60-69 years, female 795.3
GTEX-14H4A-2426-SM-664OQ 40-49 years, female 794.8
GTEX-OHPN-2426-SM-E9TI5 60-69 years, female 792.5
GTEX-1HCU8-2026-SM-9YFLE 60-69 years, female 791.3
GTEX-146FR-2426-SM-5NQAU 60-69 years, female 789.0
GTEX-P78B-2226-SM-3P5ZZ 40-49 years, female 787.3
GTEX-ZYY3-2626-SM-5N9DH 60-69 years, female 785.7
GTEX-TMMY-1926-SM-4DXUU 40-49 years, female 783.3
GTEX-15SB6-1426-SM-7KUEM 50-59 years, female 780.3
GTEX-15SHU-2926-SM-7KUKT 40-49 years, female 779.7
GTEX-1JN1M-2326-SM-ARZNG 60-69 years, female 778.0
GTEX-11EM3-1826-SM-5A5KO 20-29 years, female 775.0
GTEX-S7SF-1426-SM-4AT5A 20-29 years, female 774.4
GTEX-11P81-2126-SM-5HL6N 30-39 years, female 773.5
GTEX-1A8FM-2426-SM-7IGPE 50-59 years, female 769.6
GTEX-1IE54-2626-SM-CMKFY 40-49 years, female 769.2
GTEX-ZAK1-2426-SM-EXOHM 50-59 years, female 766.6
GTEX-14DAQ-2326-SM-5S2QX 60-69 years, female 766.3
GTEX-1HBPM-2726-SM-9WYUA 60-69 years, female 764.4
GTEX-QVJO-2526-SM-CYPRA 60-69 years, female 761.9
GTEX-13PVR-1426-SM-5S2PW 60-69 years, female 757.7
GTEX-UJHI-1326-SM-4IHJO 50-59 years, female 743.0
GTEX-ZV6S-1326-SM-59HJA 40-49 years, female 742.9
GTEX-131YS-2426-SM-5J2OD 60-69 years, female 739.2
GTEX-1LNCM-1026-SM-E9U5D 50-59 years, female 739.1
GTEX-145LS-2526-SM-5TDC9 60-69 years, female 732.6
GTEX-15DYW-2926-SM-6PANA 60-69 years, female 731.7
GTEX-X15G-1926-SM-4PQZQ 50-59 years, female 731.2
GTEX-ZZPU-2226-SM-5EGIV 50-59 years, female 731.0
GTEX-ZXES-0626-SM-5E45P 30-39 years, female 730.4
GTEX-1F48J-2526-SM-7P8TU 50-59 years, female 728.6
GTEX-SE5C-1126-SM-4BRWZ 40-49 years, female 727.5
GTEX-13N11-1526-SM-5L3FL 50-59 years, female 725.1
GTEX-13QBU-1726-SM-5IJFQ 40-49 years, female 719.2
GTEX-ZP4G-0826-SM-4WWF3 20-29 years, female 718.8
GTEX-PX3G-2526-SM-48TZV 20-29 years, female 711.7
GTEX-14BMU-1926-SM-5S2QC 20-29 years, female 701.1
GTEX-QCQG-1226-SM-48U23 50-59 years, female 700.7
GTEX-14PKU-1326-SM-6871B 40-49 years, female 699.5
GTEX-15ER7-2526-SM-7KUFW 20-29 years, female 699.3
GTEX-XUW1-0326-SM-4BOOR 50-59 years, female 692.7
GTEX-11XUK-1326-SM-5EQM4 40-49 years, female 692.4
GTEX-18D9A-1026-SM-7KFRU 30-39 years, female 691.7
GTEX-11I78-2026-SM-5987C 50-59 years, female 690.0
GTEX-1PIEJ-1926-SM-EVYB7 20-29 years, female 687.5
GTEX-1R9JW-1426-SM-DTX9K 30-39 years, female 685.3
GTEX-ZC5H-2226-SM-4WAWS 40-49 years, female 682.4
GTEX-18A7A-2826-SM-7LT8J 50-59 years, female 681.9
GTEX-1LGOU-1126-SM-D3LAI 20-29 years, female 676.3
GTEX-13W3W-2326-SM-5LU4Y 60-69 years, female 669.7
GTEX-11DXX-1726-SM-5H11T 60-69 years, female 665.7
GTEX-1NUQO-1826-SM-E6CQU 20-29 years, female 663.0
GTEX-1GN1U-2426-SM-9KNTU 50-59 years, female 662.4
GTEX-145ME-1426-SM-5RQJS 40-49 years, female 652.8
GTEX-14PJ6-1626-SM-6872D 60-69 years, female 651.9
GTEX-1I4MK-1726-SM-ARL7O 50-59 years, female 645.9
GTEX-1JN76-1526-SM-CNPPF 20-29 years, female 639.9
GTEX-1MCYP-1326-SM-EV7AD 20-29 years, female 638.8
GTEX-Q734-1426-SM-DTXFX 40-49 years, female 638.6
GTEX-1IDJU-1026-SM-AHZ2U 60-69 years, female 637.1
GTEX-PWCY-1726-SM-48TD3 20-29 years, female 635.8
GTEX-ZVT2-0626-SM-5GICR 50-59 years, female 634.9
GTEX-17F9Y-2326-SM-7DUFP 70-79 years, female 634.3
GTEX-XV7Q-1626-SM-4BRWC 40-49 years, female 633.4
GTEX-1CAMS-2326-SM-793CR 40-49 years, female 631.6
GTEX-16NGA-1626-SM-72D6M 40-49 years, female 631.3
GTEX-1J8EW-2526-SM-CKZO2 60-69 years, female 628.0
GTEX-1HCU6-2326-SM-ACKXP 60-69 years, female 626.8
GTEX-17JCI-2526-SM-7DHLB 60-69 years, female 625.4
GTEX-14PN3-1626-SM-6AJAV 60-69 years, female 620.7
GTEX-1LVAN-1626-SM-CNPQ7 50-59 years, female 619.9
GTEX-12WSJ-1326-SM-5GCOB 40-49 years, female 619.7
GTEX-1J1OQ-1826-SM-CL53R 40-49 years, female 617.8
GTEX-146FH-2626-SM-5Q5E1 50-59 years, female 616.6
GTEX-1I1GT-1226-SM-B2LVK 60-69 years, female 615.4
GTEX-PWN1-2526-SM-48TDS 40-49 years, female 612.3
GTEX-1LGRB-2126-SM-COH48 50-59 years, female 611.6
GTEX-Y3IK-2226-SM-4YCD4 50-59 years, female 611.0
GTEX-T2IS-1926-SM-4DM74 20-29 years, female 610.8
GTEX-U3ZN-0926-SM-4DXTU 30-39 years, female 610.8
GTEX-YJ8O-1226-SM-5P9JE 40-49 years, female 607.9
GTEX-1QPFJ-1626-SM-DTX7X 30-39 years, female 607.1
GTEX-ZGAY-2226-SM-4YCCX 40-49 years, female 606.2
GTEX-S341-1226-SM-4AD5S 40-49 years, female 596.8
GTEX-14PJM-2926-SM-69LOE 50-59 years, female 596.4
GTEX-1GN1W-1526-SM-7P8TG 50-59 years, female 596.4
GTEX-1QCLZ-2226-SM-DTX7R 60-69 years, female 592.5
GTEX-RU1J-1426-SM-46MUV 20-29 years, female 590.2
GTEX-14A5I-2726-SM-5SIB3 50-59 years, female 588.7
GTEX-1GF9U-1926-SM-7P8TZ 40-49 years, female 587.9
GTEX-TML8-1126-SM-4DXSS 40-49 years, female 586.9
GTEX-15SDE-1726-SM-6LPJS 50-59 years, female 586.7
GTEX-1399S-2326-SM-5K7YV 30-39 years, female 575.2
GTEX-1ICG6-1626-SM-ARL81 70-79 years, female 573.8
GTEX-1C475-0526-SM-793AC 40-49 years, female 565.8
GTEX-1HFI7-1126-SM-A96S5 50-59 years, female 553.0
GTEX-11VI4-0726-SM-5GU5B 40-49 years, female 539.2
GTEX-OHPL-2526-SM-3MJGT 60-69 years, female 536.7
GTEX-1HBPH-2926-SM-9WPNX 40-49 years, female 529.5
GTEX-1HCUA-1026-SM-A9SMI 50-59 years, female 511.5
GTEX-1MCC2-1126-SM-EVYD6 30-39 years, female 466.4
Show allShow less

VAGINA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

1126.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Vagina
Scaled Tags Per Million: 1126.0
FF:10204-103F6 68 years, female 1126.0

Contact

  • NEWS ARTICLES
  • PRESS ROOM

The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS

The Human Protein Atlas

  • DOWNLOADABLE DATA
  • LICENCE & CITATION
  • HELP & FAQ
The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.


contact@proteinatlas.org