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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:612.2 nTPM
HPA Brain:804.4 nTPM
GTEx:612.2 nTPM
FANTOM5:681.1 Scaled Tags Per Million
Pig:246.9 nTPM
Mouse:2090.7 nTPM

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

804.4
Sample id Sample description nTPM
Amygdala
nTPM: 804.4
1987 Female, age 91, left hemisphere 953.1
2814 Male, age 76, right hemisphere 827.2
2514 Male, age 75, right hemisphere 811.5
2695 Female, age 67, right hemisphere 758.6
2517 Female, age 94, left hemisphere 671.4
Basal amygdala
nTPM: 590.9
2609 Male, age 75, right hemisphere 685.6
2110 Male, age 80, left hemisphere 680.8
1955 Male, age 76, both hemispheres 649.3
2243 Female, age 91, right hemisphere 613.3
2827 Female, age 67, right hemisphere 458.4
2685 Female, age 94, left hemisphere 458.3
Central amygdala
nTPM: 658.8
2515 Male, age 75, right hemisphere 830.1
1905 Male, age 76, both hemispheres 677.7
2826 Female, age 94, left hemisphere 623.0
2239 Male, age 80, left hemisphere 613.9
2701 Female, age 91, right hemisphere 549.2
Corticomedial amygdala
nTPM: 616.9
2428 Male, age 75, right hemisphere 741.9
2242 Female, age 91, right hemisphere 652.2
2829 Male, age 80, left hemisphere 651.2
2429 Female, age 94, left hemisphere 616.5
2240 Male, age 76, both hemispheres 605.3
2535 Female, age 67, right hemisphere 434.4
Lateral amygdala
nTPM: 624.1
1883 Male, age 76, both hemispheres 762.2
2516 Male, age 75, right hemisphere 668.1
2534 Female, age 94, left hemisphere 666.1
2256 Male, age 80, left hemisphere 561.5
2830 Female, age 67, right hemisphere 545.0
2255 Female, age 91, right hemisphere 541.7

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

612.2
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 612.2
Samples: 152

Max nTPM: 2897.9
Min nTPM: 319.9
Std nTPM: 292.4
Median nTPM: 532.9
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 2897.9
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 1918.5
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 1711.9
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 1291.8
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 1202.2
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 1201.9
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 1161.3
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 1079.3
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 1031.2
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 1030.8
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 926.4
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 868.1
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 865.0
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 861.9
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 834.1
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 819.8
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 811.9
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 811.7
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 788.4
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 783.8
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 783.2
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 781.3
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 778.0
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 752.4
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 731.7
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 726.9
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 709.3
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 707.6
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 705.3
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 704.8
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 702.4
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 695.7
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 691.7
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 691.1
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 689.9
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 689.8
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 683.4
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 670.6
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 668.2
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 668.1
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 666.2
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 658.4
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 653.5
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 651.2
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 647.0
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 646.7
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 644.1
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 633.3
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 626.7
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 623.4
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 605.0
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 600.9
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 600.2
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 597.6
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 590.1
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 587.7
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 581.1
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 580.3
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 573.2
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 568.3
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 565.9
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 564.8
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 564.1
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 562.1
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 562.0
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 557.2
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 550.9
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 549.8
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 549.0
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 545.1
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 543.1
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 542.6
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 538.1
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 535.5
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 535.3
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 534.4
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 531.4
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 530.7
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 524.0
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 523.4
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 523.4
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 522.4
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 521.2
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 520.7
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 518.5
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 517.7
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 514.6
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 513.8
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 513.1
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 509.5
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 509.1
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 507.0
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 506.3
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 505.4
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 504.6
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 494.2
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 493.8
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 490.3
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 490.2
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 488.7
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 486.7
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 486.2
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 482.9
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 481.7
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 479.9
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 478.0
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 475.6
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 475.4
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 475.1
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 473.5
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 471.8
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 471.6
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 468.8
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 464.8
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 464.4
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 462.6
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 462.3
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 461.5
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 459.1
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 455.2
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 453.9
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 452.8
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 451.4
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 444.6
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 441.9
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 441.4
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 435.3
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 431.9
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 430.7
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 429.6
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 428.0
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 427.4
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 427.0
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 422.3
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 420.7
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 417.3
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 416.1
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 413.0
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 407.8
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 403.5
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 401.8
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 398.5
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 398.0
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 395.9
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 394.2
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 382.5
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 366.7
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 360.8
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 358.6
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 355.5
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 355.2
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 319.9
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

681.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 681.1
FF:10151-102I7 76 years, female 681.1

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

246.9
Pig sample Sample description nTPM
Amygdala
nTPM: 246.9
Samples: 4

Max nTPM: 339.4
Min nTPM: 209.4
Sample A Female 339.4
Sample B Female 209.4
Sample C Male 216.3
Sample D Male 222.3

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

2090.7
Mouse sample Sample description nTPM
Amygdala
nTPM: 2090.7
Samples: 4

Max nTPM: 2247.6
Min nTPM: 1902.1
Sample A Male 2247.6
Sample B Male 1902.1
Sample C Female 2087.6
Sample D Female 2125.3

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