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BRAIN THALAMUS Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Thalamus
THALAMUS - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
HPA Brain:1007.6 nTPM
FANTOM5:664.1 Scaled Tags Per Million
Pig:464.1 nTPM
Mouse:3022.8 nTPM

THALAMUS - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1007.6
Sample id Sample description nTPM
Anterior thalamic nucleus, ventral
nTPM: 993.0
2396 Male, age 61, right hemisphere 1255.5
2032 Female, age 42, unknown 909.5
2497 Male, age 66, unknown 814.1
Centromedial thalamic nucleus
nTPM: 665.2
2401 Male, age 76, right hemisphere 777.5
2279 Female, age 85, left hemisphere 553.0
Habenula
nTPM: 942.1
2203 Male, age 61, left hemisphere 1099.2
1957 Male, age 80, both hemispheres 957.8
2252 Male, age 62, unknown 859.1
2276 Male, age 66, unknown 852.5
Lateral geniculate body
nTPM: 955.8
2106 Female, age 67, right hemisphere 1303.2
1953 Male, age 62, unknown 1093.4
2575 Female, age 94, right hemisphere 1019.8
2035 Female, age 72, unknown 992.9
2399 Male, age 61, left hemisphere 934.1
2841 Male, age 80, both hemispheres 916.5
2659 Male, age 66, unknown 703.3
2857 Male, age 74, right hemisphere 683.0
Lateral thalamic nuclei
nTPM: 884.7
2573 Female, age 94, left hemisphere 1171.5
2765 Female, age 67, both hemispheres 1089.0
1903 Male, age 76, left hemisphere 902.6
2661 Female, age 72, unknown 638.5
2577 Male, age 74, both hemispheres 622.0
Medial dorsal thalamic nucleus
nTPM: 901.0
2572 Female, age 94, right hemisphere 1406.5
1971 Male, age 61, right hemisphere 1219.8
2498 Male, age 66, unknown 989.4
1859 Male, age 76, both hemispheres 944.4
1810 Male, age 48, unknown 943.2
2026 Male, age 62, unknown 887.8
1930 Female, age 42, unknown 872.6
2283 Male, age 80, right hemisphere 839.9
2039 Female, age 72, unknown 790.2
2492 Male, age 75, right hemisphere 785.3
2402 Female, age 67, both hemispheres 756.2
2576 Male, age 74, both hemispheres 703.9
2660 Female, age 72, unknown 573.1
Medial geniculate body
nTPM: 807.2
2650 Female, age 94, left hemisphere 1070.2
1811 Female, age 42, unknown 868.1
2657 Male, age 74, right hemisphere 830.0
2207 Male, age 80, right hemisphere 799.5
2049 Male, age 76, both hemispheres 740.5
2217 Female, age 72, unknown 720.5
2571 Male, age 75, right hemisphere 621.6
Nucleus reuniens
nTPM: 818.1
2212 Female, age 67, left hemisphere 961.2
2205 Male, age 80, left hemisphere 760.7
2210 Female, age 85, left hemisphere 732.5
Nucleus rhomboideus
nTPM: 793.3
2213 Female, age 67, left hemisphere 904.9
2206 Male, age 80, both hemispheres 848.1
2280 Female, age 85, left hemisphere 626.9
Posterior thalamic nucleus
nTPM: 1007.6
2266 Male, age 76, right hemisphere 1322.3
2649 Female, age 94, both hemispheres 1321.2
2495 Female, age 67, right hemisphere 782.5
2655 Male, age 74, right hemisphere 604.1
Pulvinar
nTPM: 889.0
1972 Male, age 62, unknown 1106.1
1932 Male, age 80, right hemisphere 1072.1
2398 Male, age 61, left hemisphere 921.0
2499 Male, age 66, unknown 902.7
2214 Male, age 76, right hemisphere 902.0
1899 Female, age 42, unknown 893.9
1929 Male, age 48, unknown 874.6
2582 Female, age 72, unknown 755.8
2496 Female, age 67, right hemisphere 733.4
2724 Male, age 74, right hemisphere 728.5
Subthalamic nucleus
nTPM: 849.8
2282 Male, age 61, both hemispheres 1038.8
2124 Male, age 62, unknown 968.9
2658 Male, age 74, both hemispheres 916.2
2406 Female, age 72, unknown 863.2
2275 Male, age 66, unknown 861.5
2056 Female, age 72, unknown 770.5
2779 Female, age 42, unknown 728.5
2216 Male, age 48, unknown 650.6
Ventral posterolateral thalamic nucleus
nTPM: 798.0
2397 Male, age 61, right hemisphere 1028.0
2740 Male, age 76, right hemisphere 913.8
2197 Male, age 80, both hemispheres 846.8
2570 Male, age 75, right hemisphere 772.3
2578 Male, age 74, both hemispheres 706.4
2581 Female, age 72, unknown 520.8
Ventral posteromedial thalamic nucleus
nTPM: 873.1
2202 Male, age 61, left hemisphere 1178.0
2127 Male, age 76, right hemisphere 859.8
2281 Male, age 75, right hemisphere 836.9
2758 Male, age 80, both hemispheres 803.7
2653 Male, age 74, both hemispheres 687.1
Ventral thalamic nuclei
nTPM: 847.1
1860 Male, age 76, both hemispheres 1104.2
1845 Male, age 48, unknown 1015.3
1912 Female, age 42, unknown 844.4
2204 Male, age 80, both hemispheres 843.6
2285 Male, age 62, unknown 828.5
2291 Female, age 72, unknown 821.0
2580 Male, age 66, unknown 820.3
2858 Female, age 72, unknown 676.0
2652 Male, age 74, left hemisphere 670.5
Zona incerta
nTPM: 703.9
2822 Male, age 74, right hemisphere 905.4
2215 Male, age 66, unknown 888.0
2208 Male, age 80, right hemisphere 689.1
2403 Male, age 62, unknown 536.8
2663 Female, age 72, unknown 500.2

THALAMUS - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

664.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Thalamus
Scaled Tags Per Million: 664.1
FF:10154-103A1 76 years, female 664.1

THALAMUS - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

464.1
Pig sample Sample description nTPM
Thalamus
nTPM: 464.1
Samples: 4

Max nTPM: 503.2
Min nTPM: 355.5
Sample A Female 503.2
Sample B Female 355.5
Sample C Male 494.9
Sample D Male 502.8

THALAMUS - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

3022.8
Mouse sample Sample description nTPM
Thalamus
nTPM: 3022.8
Samples: 4

Max nTPM: 3427.7
Min nTPM: 2426.8
Sample A Male 2426.8
Sample B Male 3153.1
Sample C Female 3083.5
Sample D Female 3427.7

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