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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:153.7 nTPM
HPA Brain:202.4 nTPM
GTEx:153.7 nTPM
FANTOM5:157.4 Scaled Tags Per Million
Pig:86.6 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

202.4
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 190.4
1981 Female, age 72, midline 229.4
2194 Female, age 79, both hemispheres 209.4
2565 Male, age 75, midline 180.6
2048 Male, age 55, midline 178.0
2816 Male, age 47, midline 154.7
Cervical spinal cord, dorsal horn
nTPM: 202.4
2173 Female, age 72, unknown 267.8
2721 Male, age 90, both hemispheres 232.9
2297 Male, age 75, both hemispheres 210.5
2069 Male, age 47, both hemispheres 201.2
1877 Male, age 55, unknown 161.3
2296 Male, age 66, both hemispheres 140.5
Cervical spinal cord, ventral horn
nTPM: 192.8
2098 Female, age 72, unknown 213.3
2068 Male, age 55, unknown 202.0
2480 Male, age 75, both hemispheres 195.6
2809 Male, age 90, both hemispheres 190.5
2295 Male, age 66, both hemispheres 189.3
2820 Female, age 79, both hemispheres 166.0

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

153.7
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 153.7
Samples: 159

Max nTPM: 300.6
Min nTPM: 100.0
Std nTPM: 34.7
Median nTPM: 145.9
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 300.6
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 292.6
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 275.7
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 252.8
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 241.0
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 225.5
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 222.6
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 221.4
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 217.0
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 215.5
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 214.1
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 210.0
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 209.8
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 203.4
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 199.5
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 195.2
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 194.3
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 194.3
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 193.4
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 190.7
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 190.4
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 189.8
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 188.4
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 187.7
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 185.4
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 185.3
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 183.5
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 181.6
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 180.6
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 179.2
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 178.6
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 177.0
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 175.6
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 175.0
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 174.4
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 174.3
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 174.0
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 172.0
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 170.5
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 170.2
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 169.1
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 168.6
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 167.0
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 165.3
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 163.1
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 161.8
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 161.2
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 161.1
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 160.1
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 159.1
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 158.8
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 157.3
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 157.3
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 156.9
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 156.1
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 156.0
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 156.0
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 155.6
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 155.4
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 154.9
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 154.1
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 153.9
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 153.4
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 152.3
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 151.8
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 151.0
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 150.4
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 150.4
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 150.2
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 149.6
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 149.3
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 149.0
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 148.8
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 148.7
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 148.5
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 147.7
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 146.9
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 146.6
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 146.2
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 145.9
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 145.1
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 144.9
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 144.7
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 144.5
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 144.4
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 144.3
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 144.1
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 142.9
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 142.7
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 142.4
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 142.1
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 142.0
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 141.8
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 141.2
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 140.6
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 140.5
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 139.3
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 139.3
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 138.0
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 137.4
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 136.8
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 136.3
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 135.8
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 135.2
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 135.2
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 135.0
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 134.5
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 133.8
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 133.7
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 133.4
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 133.4
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 132.5
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 132.5
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 131.9
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 131.6
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 131.4
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 130.6
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 129.4
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 129.2
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 128.9
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 128.9
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 128.8
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 128.6
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 128.1
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 126.9
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 126.5
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 126.4
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 125.8
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 125.7
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 125.7
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 125.7
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 125.5
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 125.1
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 124.5
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 123.6
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 123.1
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 122.6
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 122.3
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 122.1
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 122.1
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 121.8
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 121.3
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 121.2
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 120.7
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 119.9
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 119.6
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 119.1
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 118.1
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 117.1
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 117.0
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 115.1
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 112.2
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 111.2
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 110.1
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 109.8
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 108.5
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 108.1
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 100.3
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 100.0
Show allShow less

SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

157.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 157.4
FF:10181-103D1 60 years, female 195.1
FF:10159-103A6 76 years, female 119.6

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

86.6
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 68.2
Samples: 4

Max nTPM: 79.8
Min nTPM: 58.4
Sample A Female 79.8
Sample B Female 61.2
Sample C Male 58.4
Sample D Male 73.4
Ventral spinal cord
nTPM: 86.6
Samples: 4

Max nTPM: 97.1
Min nTPM: 72.4
Sample A Female 90.3
Sample B Female 97.1
Sample C Male 86.4
Sample D Male 72.4

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